PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM01G36730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 609aa MW: 64807.3 Da PI: 7.6145 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 106.7 | 1.9e-33 | 364 | 479 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+vg OGLUM01G36730.1 364 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 457 7*********************************998555559*************************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +il+lq+q++ l+ +l++l+++ OGLUM01G36730.1 458 TILALQHQVSLLQGQLSVLESQ 479 ****************999887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 609 aa Download sequence |
MRNSATPGAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI 60 PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG 120 CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPLCGN RRTQLGVTVR 180 LRVVRHREKG WGLHAAEVLR RRQFVCEYAG ELLTTEEARR RQGLYDELAS VEISSKEKSS 240 PSVMVMLDLG RMACRAFALG MHSPLQESGG DEDESFDKED SWREWRTQQK NNLVPLQSFI 300 QSTLPFPLSL AFVSSVQQPQ LMPMPPLPMP HPPGSSKRRG AVERPASGAG LQAEEASSAG 360 PGAPCGACKF LRRRCVPGCV FAPHFSGCGG SGVGAGVGGR GRERGAAEFA AVHRVFGASN 420 VAKLLSRVPA ALRRDAARTV CYEAQARIAD PVYGSVGTIL ALQHQVSLLQ GQLSVLESQL 480 FNLRVALASA HPDTPPQHFV VLQPAHSAAS TPNQVVVNYD DLPHAVDFMD AEPAALRGLE 540 SLQLSQPLQR EEDEGHRDMN LFSDSVGQRQ LGFGSHTIKV LEVLIDEISW AQSKSSAGDQ 600 RKALLRREG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-22 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM01G36730.1 |