PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G36040.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 296aa MW: 31007.5 Da PI: 7.5016

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G36040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.1	6.6e-30	55	139	3	93
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaks 93 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ + ++++++ ++a++ OGLUM01G36040.1 55 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHL------CMGHHHHLPSAMPL 139 78*************************************************************99999443......34443443333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MILGSNQAAA AAAAAAAAEE EAAELARKHT AAVATSRQWS AQTESRIVRV SRVFGGKDRH 60 SKVKTVKGLR DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP 120 PQDHLCMGHH HHLPSAMPLM HHHGHHHHAD DDKYHVAAAA AGGGGGGGGD DVDGGGGGGA 180 AHIVGRFPAG GYHRFMGLNN PLGMVNSAAG AAMPFHYAGE SWNNGSVQDS GAGSPQVAAA 240 AAHHTSPFPS LLSLAPGPHH QLVFYSSEAE QFTVDNLGSQ GLSLSSARAF HDQTGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	4e-41	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G36040.1