PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G35450.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 488aa MW: 51286.1 Da PI: 7.3697

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G35450.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.6	4.7e-34	168	276	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssg... 88 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el++ + + + a++++ +a ++ + OGLUM01G35450.1 168 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDELPDRaeaP---PPPAAASTEQPEATEQATStsy 258 689**************************************************************5441...3222111222111111111223 PP TCP 89 .................k 89 + OGLUM01G35450.1 259 gfgnttggtmtsaasaaA 276 344445555544433330 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MGIGADGGGG GCTHQDAAEP RKQQDERRRP ARSRSAEAEA AAAAAAAGKL TTEANYTSKW 60 RRELKLEEDK NQLSKGLDPW TSNPTASAST LHYLLQEKER AQQAHEQLQI YQQQQGFGSF 120 LQHRIRQPAS RGPGGGGGGG DGGGSSGEST PVDALATAFG AGRIVRSAAG RKDRHSKVCT 180 ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR PSKAVDWLMR NAKAAIDELP DRAEAPPPPA 240 AASTEQPEAT EQATSTSYGF GNTTGGTMTS AASAAAGSFL PHSLGADRVS DSVKSLFPSS 300 STASGTASAG HDEYRGSPPD LLSRTTSNQQ PQELCLTLQS NQHQIFSHVS SNHHGMISSA 360 GVPGWPDHSQ RMQAWHAPEN STGDGRGGGN GDGYMFAMPS RQGLDQSQLF SHGEPLQSSG 420 RGWASARAWL DPLAVAAIHH QPSTMAAGQV GFGHLVGGAG GGGGFMGFLA PAAQRLEGEE 480 EHGSEVIR

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MGIGADGGGG GCTHQDAAEP RKQQDERRRP ARSRSAEAEA AAAAAAAGKL TTEANYTSKW  60
RRELKLEEDK NQLSKGLDPW TSNPTASAST LHYLLQEKER AQQAHEQLQI YQQQQGFGSF  120
LQHRIRQPAS RGPGGGGGGG DGGGSSGEST PVDALATAFG AGRIVRSAAG RKDRHSKVCT  180
ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR PSKAVDWLMR NAKAAIDELP DRAEAPPPPA  240
AASTEQPEAT EQATSTSYGF GNTTGGTMTS AASAAAGSFL PHSLGADRVS DSVKSLFPSS  300
STASGTASAG HDEYRGSPPD LLSRTTSNQQ PQELCLTLQS NQHQIFSHVS SNHHGMISSA  360
GVPGWPDHSQ RMQAWHAPEN STGDGRGGGN GDGYMFAMPS RQGLDQSQLF SHGEPLQSSG  420
RGWASARAWL DPLAVAAIHH QPSTMAAGQV GFGHLVGGAG GGGGFMGFLA PAAQRLEGEE  480
EHGSEVIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	2e-37	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G35450.1