PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G34330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 225aa MW: 25041.2 Da PI: 6.6999 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.8 | 2.9e-06 | 87 | 112 | 3 | 26 |
S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG..tCkyGdrCkFaHg 26 e+C++f+ C++G+ C+FaHg OGLUM01G34330.1 87 GEPCPDFRVAAraACPRGSGCRFAHG 112 5899999999999************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MAYETSSDHQ LAAAAEFLAA LQVHLAGAEA SSPTWGGRCA YDEDFMMYEF KVRRCPRSRA 60 HEWTSCPYAH PGEAARRRDP SHVTYTGEPC PDFRVAARAA CPRGSGCRFA HGTFETWLHP 120 SRYRTRPCRS GMLCARPVCF FAHNDKELRI VGDDAAAATP SPRSPFTTSE DSPPPSPMDM 180 KQIVLAMQQM DARKATRSVA PKTDMLQQEL EEDAPELGWV SDLLM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 7e-45 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G34330.1 |