PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G33420.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 719aa MW: 82472.6 Da PI: 6.258

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G33420.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.4	3.9e-16	20	104	14	94
T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 14 grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +rl +p f+ ++ + + ++s + tl++++g++W v+l +k +g+++lt+GW +Fv++n L+e +f++F++d+++ f +v OGLUM01G33420.3 20 RRLEIPQGFLIHIpevdhstfDASLPSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTTGWAKFVEDNSLREYEFLLFRYDDNMHF--MV 104 4688999999888888777773344488899************..******************************998888..55 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW 60 PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG 120 SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC 180 GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD 240 ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYCSS PILESRKCSL EEPKLSNQPL 300 QCDLTTEKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER 360 SEGRQPSPAS MIDQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE 420 NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA 480 EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR 540 DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETTY TSLELDYKKA 600 TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER 660 LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSK ESLLNITFH

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVDHSTF DASLPSSAKG TLQNSEGKTW  60
PVELEKLDGH VFLTTGWAKF VEDNSLREYE FLLFRYDDNM HFMVLPFGLN ACEKVIRSSG  120
SPQGKLPCDI FCCTKRGRDG DRLTEAANSL TPSHSQVLQR TTQGHELISP QSFPDQHEVC  180
GSKDGLDEHL SLNGPMEDDK ANAIAEVMSI LDVDKVTVEL FCAMLVFYKW NVDAVAEDFD  240
ICRGKPQIQN LFLKHKLHFQ FDIVKRKLRK FFPPDDYCSS PILESRKCSL EEPKLSNQPL  300
QCDLTTEKCR LVDEHDLCNF SQKKRRKRGS FCSPETPRRS PRLARQNNSH DSAENTLKER  360
SEGRQPSPAS MIDQAESRSE QACLCHDKTD SGSLFQDSKK VKPAHGEVDL CEEPQHNQGE  420
NEGNLDQVNN KETDEEQIER NAVETSESFT RRGCIKSSPA SCEVPACLRI NELSLTWKPA  480
EHVNPLEKVL LDIQRDNFMK TISHVQGIIR NHPSDLLTAD VITVVVQKEI FKWNCCLKDR  540
DAQRIVNALL EHARKIKEMH NFNSEMRKEE FSAKLKVHLK WQLKEVETTY TSLELDYKKA  600
TSDDNIAFSM LHDKKKKLHN LQDEITGLQQ SLEMKKDEMQ KLAHQVAEHE SVFQKSLMER  660
LRIKEVMKGY EQTLAEVKVQ LTSTEVGSID IEALVKVEMD NMTKEIELSK ESLLNITFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	327	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16640.1	3e-13	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G33420.3