PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G32660.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 403aa    MW: 43506.1 Da    PI: 9.6256
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G32660.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15183280295
                      EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      +k+l  sdv+++gr+vlpkk ae++     +  k ++k l + d+++ + W++k++y  ++ks++yvl+ ++ ++v+ ++L+ gD++v++ d+ 
  OGLUM01G32660.1 183 QKELRYSDVSQLGRIVLPKKEAEAYlpiltS--KDGKKSLCMHDLQNaQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHDLQLGDSIVIYKDD- 272
                      688899**********************752..446678*****665599*******89999999**99.********************444. PP

                      SEE..EEE CS
               B3  88 sefelvvk 95 
                      ++ ++v++
  OGLUM01G32660.1 273 ENNRFVIG 280
                      55555665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MRGEERWQEQ PALASHPSRA TLRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS  60
ASPPVLPPIK DQGARPPTLA ASAAAASSPP PPPPPPPIPP LPPSTSTSAA RPTDMAGVTS  120
KRRSSSASTS SSSGDGAAVS DRPRGVTRKR RSGGRCPRPA ASLRPAAPRP SSHHTAGLRV  180
ILQKELRYSD VSQLGRIVLP KKEAEAYLPI LTSKDGKKSL CMHDLQNAQL WTFKYRYWPN  240
NKSRMYVLEN TGDYVRTHDL QLGDSIVIYK DDENNRFVIG AKKAGDQQAA TVPQVDEHIS  300
TLFPIFPIAQ VDDYLSPMAP QVDISAFVPH ADENHEIFDG ILNSLPEIPV ANVRYSDFFD  360
PFDDGMDMAN TLNANANQSA SLHVTDDKSG HSLIPNPKSG PHM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152TRKRRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-39B3 family protein