PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G31260.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 396aa    MW: 41534.6 Da    PI: 9.1396
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G31260.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.3e-1279127155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s++kGV   + +grW A+I++      r +r++lg+f  +++Aa+a++ a+++++g
  OGLUM01G31260.1  79 SKFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEDDAARAYDVAAQRFRG 127
                      79****9888.8*********......44**********99*************98 PP
2B397.68e-31215307186
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ 
  OGLUM01G31260.1 215 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDDAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSA 307
                      89*******************************5556799*************************************************9653 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG  60
RVCGGGGGAG GAGGKLPSSK FKGVVPQPNG RWGAQIYERH QRVWLGTFAG EDDAARAYDV  120
AAQRFRGRDA VTNFRPLAEA DPDAAAELRF LATRSKAEVV DMLRKHTYFD ELAQSKRTFA  180
ASTPSAATTT ASLSNGHLSS PRSPFAPAAA RDHLFDKTVT PSDVGKLNRL VIPKQHAEKH  240
FPLQLPSAGG ESKGVLLNFE DDAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLHAGDV  300
VGFYRSAASA GDDGKLFIDC KLVRSTGAAL ASPADQPAPS PVKAVRLFGV DLLTAPTPAP  360
APVEQMAGCK RARDLAATTP PQAAAFKKQC IELALV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15967GGRVCGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-105RAV family protein