PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G30360.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 293aa    MW: 32496.1 Da    PI: 10.3888
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G30360.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.92.9e-22101177371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  OGLUM01G30360.2 101 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 177
                      689*******...99999999**************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MAPPCGDAAA AASAAPGLAN LLIREGAGLP SRPERYPPFR PCTSDSFAPI SREGDDIPPQ  60
KKSVSLRSGG GGGGGNAAER EEGGANRNGK KEKAGAQRIT GWGLREFSKI VSKKVEAKGR  120
TTYNEVADEI FAELKSITQN GLEFDEKNIR RRVYDAFNVL IAIRVIAKDK KEIKWMGLTN  180
YRYEKIQKLE EVHKELITRI KNKKKLLQEI EKQNITLRNQ ASQRPAESVN GILLPFLLIK  240
TSRKARVEIE ISEDSKFARF DFNGAPFTMH DDVSILEAIR RNNKGRAGLS IHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-52E2F/DP family protein