PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G29010.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 298aa    MW: 31347.6 Da    PI: 4.276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G29010.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20101151155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ +++a+ +l+g
  OGLUM01G29010.1 101 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDNAAIQLRG 151
                      69********.**********88.....55*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MSRSRTVRIF WDDPDLTDSS GEEEGCGGRR VGSMVRELPP AQLPVAQAGF APAAAAAAAA  60
LPEQCSGGDG DMGRRVVGGG CTVGVGRRRL TKGGGPGAPS TKFRGVRRRP WGKFAAEIRD  120
PWRGVRVWLG TFDTAEEAAR VYDNAAIQLR GPSATTNFSA STNSAGAQDP VAVGYESGAE  180
SSPAVSSPTS VLRKVPSLCS LAEDKDDYEA GPCEPATAAG SNLTVLEEEL GEFVPFEDAP  240
VYGGSSFWDF EPESGFLYAE PSSPETPWDA GATSSGEAQD YFQDLRDLFP LNPLPAIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.19e-25ERF family protein