PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G28310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 333aa MW: 36056.5 Da PI: 7.9986 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.3 | 1.7e-15 | 259 | 284 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg OGLUM01G28310.1 259 FKTELCNKWEETGDCPYGDQCQFAHG 284 79***********************9 PP | |||||||
2 | zf-CCCH | 18.9 | 2.7e-06 | 297 | 322 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ Cr +++ C+yG rC+F H+ OGLUM01G28310.1 297 YKTAVCRMVLAGDVCPYGHRCHFRHS 322 9**********55**********998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence |
MQEALVSPVR SALELKPFNF GDQRLASSPR YLPSGDDALY RCSSPFSPSF GFSSPSPLAT 60 SVSLSPSSSA SLVDDGDDGG AAADATGQRL QLARLALQYQ EVADRYELCL SHLAEAAEEA 120 AALRLENAEL RVTNSDLALR LALLSGKHTA AVAVADEIRR LRLGEQKVAA ATKERTPEKL 180 AVLPKSISVR STSYLKLNQQ SQAATATSAA PNRKPRTSSN PTNPPNSQRA YDGGKKGDEQ 240 KAQPADSGAE LEVYNQGMFK TELCNKWEET GDCPYGDQCQ FAHGVAELRP VIRHPRYKTA 300 VCRMVLAGDV CPYGHRCHFR HSLTPAERLL LRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 3e-50 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G28310.1 |