PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G27180.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 380aa MW: 39903 Da PI: 7.0634

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G27180.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.3e-32	205	262	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ OGLUM01G27180.2 205 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 262 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSSGGGGGGG GDRHGPYHQH GHLGRGEGAD YVYSSSDMES FFFSQPGGVG IGGGGGGVVG 60 AGGADEIMPY SSITDYLQGL LDPSGLARHL DVACPSSQDT AVKQELSLDV TSHDSQGTGG 120 VAGEGIAQAT PNSSASFSSS DGEAEGGKSS RRCKKGQAKA EEEDDKDEED GENSKKPNKP 180 KKKAEKRQRQ PRVAFLTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTPKCGVKKR 240 VERSYQDPST VITTYEGQHT HHSPASLRGG GGGVGIVGGH HHHHLFMPGV HGLPPSHLMP 300 AGFHPELMGL MHHHPAMAAA AAANPSMYFP GVAASAPPPP AAAGGGAMPP NDHTPLQQHH 360 FTDYALLQDL FPSTMPSSNP

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSSGGGGGGG GDRHGPYHQH GHLGRGEGAD YVYSSSDMES FFFSQPGGVG IGGGGGGVVG  60
AGGADEIMPY SSITDYLQGL LDPSGLARHL DVACPSSQDT AVKQELSLDV TSHDSQGTGG  120
VAGEGIAQAT PNSSASFSSS DGEAEGGKSS RRCKKGQAKA EEEDDKDEED GENSKKPNKP  180
KKKAEKRQRQ PRVAFLTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TTPKCGVKKR  240
VERSYQDPST VITTYEGQHT HHSPASLRGG GGGVGIVGGH HHHHLFMPGV HGLPPSHLMP  300
AGFHPELMGL MHHHPAMAAA AAANPSMYFP GVAASAPPPP AAAGGGAMPP NDHTPLQQHH  360
FTDYALLQDL FPSTMPSSNP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	186	RRCKKGQAKAEEEDDKDEEDGENSKKPNKPKKKAEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	5e-42	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G27180.2