PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G26510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 429aa MW: 46944.3 Da PI: 7.5864

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G26510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34	4.9e-11	107	132	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++ t tCk+G++CkF H++ OGLUM01G26510.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132 7889********************97 PP
2	zf-CCCH	40.7	4.1e-13	157	182	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tG Ck+G++CkF+H++ OGLUM01G26510.1 157 GEPDCPFFMKTGKCKFGSKCKFNHPK 182 789*********************96 PP
3	zf-CCCH	21.1	5.5e-07	184	204	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +f+a+tG Ck+ + CkF+H++ OGLUM01G26510.1 184 KFYAKTGKCKFRAMCKFNHPK 204 79*****************96 PP
4	zf-CCCH	40	6.7e-13	257	282	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f++++G Ck+G++C+F+H+ OGLUM01G26510.1 257 PGEVDCPFYMKMGSCKFGSTCRFNHP 282 57899********************9 PP
5	zf-CCCH	36.2	1e-11	339	360	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG+Ck+ drCkF+H+ OGLUM01G26510.1 339 VCDFYMKTGFCKFADRCKFHHP 360 7********************8 PP
6	zf-CCCH	34	5.1e-11	394	416	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C f+++tG Ck+G +CkF H+p OGLUM01G26510.1 394 VCAFYMKTGVCKFGMQCKFDHPP 416 7********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR 60 SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC 120 KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQQGEPD CPFFMKTGKC KFGSKCKFNH 180 PKEKFYAKTG KCKFRAMCKF NHPKDIEIPS SQNETESAVT VEGETDIGSA ADSVSAKMQT 240 PVAAAQEFNS KGLPMRPGEV DCPFYMKMGS CKFGSTCRFN HPDRLVLNFP LPLGQTILPT 300 PESMLLNSAN FMQGFDFHAA HMPVGPGPVT YPQRPGATVC DFYMKTGFCK FADRCKFHHP 360 IDRSAPDPSA NWEPAEESVQ LTLAGLPRRE DAVVCAFYMK TGVCKFGMQC KFDHPPPQEA 420 IAKVSNSGS

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR  60
SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC  120
KFGGSCKFDH PQWVPEGGIP NWKEAANVEE SYPEQQGEPD CPFFMKTGKC KFGSKCKFNH  180
PKEKFYAKTG KCKFRAMCKF NHPKDIEIPS SQNETESAVT VEGETDIGSA ADSVSAKMQT  240
PVAAAQEFNS KGLPMRPGEV DCPFYMKMGS CKFGSTCRFN HPDRLVLNFP LPLGQTILPT  300
PESMLLNSAN FMQGFDFHAA HMPVGPGPVT YPQRPGATVC DFYMKTGFCK FADRCKFHHP  360
IDRSAPDPSA NWEPAEESVQ LTLAGLPRRE DAVVCAFYMK TGVCKFGMQC KFDHPPPQEA  420
IAKVSNSGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-132	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G26510.1