PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G26320.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1463aa MW: 151757 Da PI: 3.7024

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G26320.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.3	4e-11	1373	1397	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ OGLUM01G26320.1 1373 CGSCRILLAYFRGAGYVHCTCCQTM 1397 ***********************96 PP
2	zf-LSD1	40.5	4.6e-13	1411	1435	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V OGLUM01G26320.1 1411 CGHCATLLMYPFGAPAVKCSLCLFV 1435 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1463 aa Download sequence
MASSPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP 60 GQATEGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP 120 SPHPPAEPSV EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPA 180 RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA PEPLTPPLES 240 GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV VAVSPEEAPG 300 STVAMEVMYG ETDTSAVSVS PVLGSAETDA TEIDVIAGMQ EEAPGSTVAM EVMYRENDTA 360 AVSVSPVLES REPDVAEGDV VAGVQEAHGS KFSMEVMYRE TDAAAVSVSP VLESGEPDKA 420 ENDAVEEMQE EAHGSRFAME ATYGEPDASA VSVSPVLESV EPDVTEIDVV SEIQEEAPDS 480 TLAMEVTSGE TDTAAVSAFP VLDGGDPDAA EKNVVAGMQE EEAPDSTLAI EVTSGETDTA 540 AVSVSPVLEG VDPDAAEIDV VAGMQEEPPG STLAMEVTYR ETDATAASVS PVLDSGDPDA 600 AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV VAGMQEEAPG 660 SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKLAM EVMYGETGTA 720 AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP EMAPAGSENC 780 KVSWLPLPPP TPLGESMPSL PVAAAPEVLL VMPEEAIESV PSSEALDAEK PASITQAEPS 840 SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR PLPALEVTNM 900 ESDTVLSILP TTVLPTEGTE GLLQQPLLRP PSPVVQSEPC LQNEMAPPGF ENFKSSSEPC 960 SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF ENFKSSWPPL 1020 PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD SGVESSQKPL 1080 PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT EPVSVIEEAP 1140 QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP DMVHSGCDNS 1200 EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG TVPIRSSPLK 1260 NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA TTTDLVSTTA 1320 MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ MVCGSCRILL 1380 AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS LCLFVTEIGE 1440 RNVRRRLSIE QPTRTNSSGL AEA

Sequence ? help Back to Top

Protein Sequence Length: 1463 aa Download sequence

MASSPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP  60
GQATEGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP  120
SPHPPAEPSV EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPA  180
RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA PEPLTPPLES  240
GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV VAVSPEEAPG  300
STVAMEVMYG ETDTSAVSVS PVLGSAETDA TEIDVIAGMQ EEAPGSTVAM EVMYRENDTA  360
AVSVSPVLES REPDVAEGDV VAGVQEAHGS KFSMEVMYRE TDAAAVSVSP VLESGEPDKA  420
ENDAVEEMQE EAHGSRFAME ATYGEPDASA VSVSPVLESV EPDVTEIDVV SEIQEEAPDS  480
TLAMEVTSGE TDTAAVSAFP VLDGGDPDAA EKNVVAGMQE EEAPDSTLAI EVTSGETDTA  540
AVSVSPVLEG VDPDAAEIDV VAGMQEEPPG STLAMEVTYR ETDATAASVS PVLDSGDPDA  600
AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV VAGMQEEAPG  660
SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKLAM EVMYGETGTA  720
AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP EMAPAGSENC  780
KVSWLPLPPP TPLGESMPSL PVAAAPEVLL VMPEEAIESV PSSEALDAEK PASITQAEPS  840
SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR PLPALEVTNM  900
ESDTVLSILP TTVLPTEGTE GLLQQPLLRP PSPVVQSEPC LQNEMAPPGF ENFKSSSEPC  960
SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF ENFKSSWPPL  1020
PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD SGVESSQKPL  1080
PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT EPVSVIEEAP  1140
QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP DMVHSGCDNS  1200
EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG TVPIRSSPLK  1260
NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA TTTDLVSTTA  1320
MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ MVCGSCRILL  1380
AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS LCLFVTEIGE  1440
RNVRRRLSIE QPTRTNSSGL AEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-29	LSD family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G26320.1