PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G24640.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 288aa    MW: 30006.3 Da    PI: 8.1574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G24640.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.92.4e-191371841359
                      E--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  13 KevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      K+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++ Y g Hnh+
  OGLUM01G24640.1 137 KTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTAYDGVHNHP 184
                      889*************999****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MNTFTLFRDE VQKASEKVHR HHANDEEAGL FLSLGLSLGS SPDACQCHAS KKDEADAGNG  60
GGDGYLALAL RCAPAAGEPM VHPKRQRATT NSSSSSSICG EYGGGAAAAA VPAGHDDDDR  120
SCMITAASTA NRPGRVKTAK GNPWPRGYYR CTGAPGCPVK KQVQRCNHDT SVLVTAYDGV  180
HNHPITPYAA ALPPSSSSSS SVAAAMLASS SSSSTWSELQ RAMPAAQSSW SQRNYPIQAD  240
VVAKAIWDPK FQATVAAAVA SYVRDREQSA RVAGGKGAGE LFNLAPPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-21WRKY family protein