PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G24210.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 509aa MW: 56546.1 Da PI: 6.1955

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G24210.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	86.3	3.3e-27	87	188	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 q+ fw ++ ie+++df +h++P+ar+kki+ +++ m++ + P++lsk celf+ el++r+w a++ +r + +dia+a+++t+ +df OGLUM01G24210.1 87 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAKAIASTESYDF 180 68899765566******************************************************************************* PP NF-YC 92 lvdivprd 99 lvdi ++ OGLUM01G24210.1 181 LVDILRNH 188 *98665 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MRVKIRPGTQ EFYKNFTCNS STIVGTRNMK ICGLQTRFHL HHRACIEPKA GSTYTHVYYS 60 EQQREGMEQT LDIPRSLRLP TPKAQQQMDE FWRDRQKEIE TTKDFSEHAI PMARLKKIVS 120 SQKGNMMMTF DMPAFLSKMC ELFVQELAVR AWASAQSHNR CIILDTDIAK AIASTESYDF 180 LVDILRNHRV KHKSSPCSTL TTKRCRLVDQ PSTSHMPYQH QLPQFAPTYT LAIPITPSLM 240 PPISHYIPFQ YPSLSQEVSP MMASAPIVNR SMLLIHNIAR GLGLQGNNIS TFANNNIPDN 300 IIGCSSPAVL ASMMSPALLE VAGTSLNPPN SHSICMMNMI NSSDPSGSSI GDINVANQAS 360 LAPSGHFNPA ILRESSCPSF LHSNNNDTIV AIPEGVDISG TMDVANDVAA IVINGQEEHE 420 RETNVEHHQQ NEIYESIDIG IINASVADGN KCSISWDELG MADDSLLDKF LEEFQVRNDS 480 VLRSGIELHE DPFLGNVMLE NPSTSNANK

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MRVKIRPGTQ EFYKNFTCNS STIVGTRNMK ICGLQTRFHL HHRACIEPKA GSTYTHVYYS  60
EQQREGMEQT LDIPRSLRLP TPKAQQQMDE FWRDRQKEIE TTKDFSEHAI PMARLKKIVS  120
SQKGNMMMTF DMPAFLSKMC ELFVQELAVR AWASAQSHNR CIILDTDIAK AIASTESYDF  180
LVDILRNHRV KHKSSPCSTL TTKRCRLVDQ PSTSHMPYQH QLPQFAPTYT LAIPITPSLM  240
PPISHYIPFQ YPSLSQEVSP MMASAPIVNR SMLLIHNIAR GLGLQGNNIS TFANNNIPDN  300
IIGCSSPAVL ASMMSPALLE VAGTSLNPPN SHSICMMNMI NSSDPSGSSI GDINVANQAS  360
LAPSGHFNPA ILRESSCPSF LHSNNNDTIV AIPEGVDISG TMDVANDVAA IVINGQEEHE  420
RETNVEHHQQ NEIYESIDIG IINASVADGN KCSISWDELG MADDSLLDKF LEEFQVRNDS  480
VLRSGIELHE DPFLGNVMLE NPSTSNANK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-24	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G24210.1