PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G23840.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 411aa MW: 43343 Da PI: 5.5898

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G23840.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	4.9e-39	45	142	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rr+C+++C la+yfpa+qp++f+n+h+lFG +n+l+++++++ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l+++kael OGLUM01G23840.1 45 ACAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSVVYESDAWVIDPVGGAAGIVKGLSQELARVKAEL 138 7********************************************************************************************* PP DUF260 95 allk 98 +++k OGLUM01G23840.1 139 DAVK 142 9887 PP
2	DUF260	100.7	1.4e-31	262	368	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa..eqp...kkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaC++l+r+C+++C+la++fpa +qp + f+n+ +lFG+ nv+ +l a+ ++ +r+da+ s++yeA+ara+dPv+Ga+gv+++l+++l OGLUM01G23840.1 262 ACAACAHLGRACPTGCPLARCFPAagDQPadgRLFRNAFRLFGVGNVVGFLLAAggDPGKRRDAAVSVAYEADARADDPVRGAHGVVMDLEREL 355 7*******************996645456699*************999889999****************************** PP DUF260 88 eqlkaelallkee 100 ++lkaela++++ OGLUM01G23840.1 356 DCLKAELATAQSA 368 ******99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MGDEEAGPSS SGHSSPTSNT STTPPPPPQP PPPPPPPPPP PHPQACAACK HQRRRCTPEC 60 RLARYFPANQ PARFRNAHRL FGIKNILRVM ASASEELRDD AMKSVVYESD AWVIDPVGGA 120 AGIVKGLSQE LARVKAELDA VKGLIELHSR AAAQQQQQPP VAVASNGGFL PSPPPPPQGQ 180 QLLLFLPPPP PTMMLQDGHC DDETVEYDYL VDPPAVDAAA ATSTAPERPL VSPPISMAQP 240 WRPFVADISP VAVADDDDPP AACAACAHLG RACPTGCPLA RCFPAAGDQP ADGRLFRNAF 300 RLFGVGNVVG FLLAAGGDPG KRRDAAVSVA YEADARADDP VRGAHGVVMD LERELDCLKA 360 ELATAQSALA RHRQYAQPPS PPPPPPPDAL DRARALNYFC HGCYGDVDGA A

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MGDEEAGPSS SGHSSPTSNT STTPPPPPQP PPPPPPPPPP PHPQACAACK HQRRRCTPEC  60
RLARYFPANQ PARFRNAHRL FGIKNILRVM ASASEELRDD AMKSVVYESD AWVIDPVGGA  120
AGIVKGLSQE LARVKAELDA VKGLIELHSR AAAQQQQQPP VAVASNGGFL PSPPPPPQGQ  180
QLLLFLPPPP PTMMLQDGHC DDETVEYDYL VDPPAVDAAA ATSTAPERPL VSPPISMAQP  240
WRPFVADISP VAVADDDDPP AACAACAHLG RACPTGCPLA RCFPAAGDQP ADGRLFRNAF  300
RLFGVGNVVG FLLAAGGDPG KRRDAAVSVA YEADARADDP VRGAHGVVMD LERELDCLKA  360
ELATAQSALA RHRQYAQPPS PPPPPPPDAL DRARALNYFC HGCYGDVDGA A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	8e-26	LBD family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G23840.1