PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G23800.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 754aa    MW: 81272.8 Da    PI: 7.805
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G23800.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.21.3e-3845142198
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rr+C+++C la+yfpa+qp++f+n+h+lFG +n+l+++++++ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l+++kael
  OGLUM01G23800.1  45 ACAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSVVYESDAWVIDPVGGAAGIVKGLSQELARVKAEL 138
                      7********************************************************************************************* PP

           DUF260  95 allk 98 
                      +++k
  OGLUM01G23800.1 139 DAVK 142
                      9886 PP
2DUF26099.33.8e-312623681100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpa..eqp...kkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                      aCaaC++l+r+C+++C+la++fpa  +qp   + f+n+ +lFG+ nv+ +l a+  ++ +r+da+ s++yeA+ara+dPv+Ga+gv+++l+++l
  OGLUM01G23800.1 262 ACAACAHLGRACPTGCPLARCFPAagDQPadgRLFRNAFRLFGVGNVVGFLLAAggDPGKRRDAAVSVAYEADARADDPVRGAHGVVMDLEREL 355
                      7*********************996645456699*****************999889999********************************** PP

           DUF260  88 eqlkaelallkee 100
                      ++lkaela++++ 
  OGLUM01G23800.1 356 DCLKAELATAQSA 368
                      ********99875 PP
3DUF26073.25.3e-2360068417100
           DUF260  17 vlapyfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                      v a+++ + +++ ++ n+++lFG++n+ ++++a+ +e+r+d+mss+ yeA+++ar+P+yGa+gvi++l++++e++ a+l++ +++
  OGLUM01G23800.1 600 VPARVILHgDEKVRLLNAQRLFGTRNIRRFVQATLPEKRDDLMSSIKYEAQVWARNPQYGATGVIWHLERKVERELAKLSKPRQK 684
                      33444433467899****************************************************************9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    
MGDEEAGPSS SGHSSPTSNT STTPPPPPQP PPPPPPPPPP PHPQACAACK HQRRRCTPEC  60
RLARYFPANQ PARFRNAHRL FGIKNILRVM ASASEELRDD AMKSVVYESD AWVIDPVGGA  120
AGIVKGLSQE LARVKAELDA VKGLIELHSR AAAQQQQQPP VAVASNGGFL PSPPPPPQGQ  180
QLLLFLPPPP PTMMLQDGHC DDETVEYDYL VDPPAVDAAA ATSTAPERPL VSPPISMAQP  240
WRPFVADISP VAVADDDDPP AACAACAHLG RACPTGCPLA RCFPAAGDQP ADGRLFRNAF  300
RLFGVGNVVG FLLAAGGDPG KRRDAAVSVA YEADARADDP VRGAHGVVMD LERELDCLKA  360
ELATAQSALA RHRQYAQPPS PPPPPPPDAL DRARALNYFC HGCYGDVKAL PQFPGERQRR  420
LIHVASLLWV PHGDLAGSDG IHPALEQQLD DLGMPLAGSD VHHHDRPLLR DLQPHLHRRP  480
IPAEIWPERR FHPRPPTSTS LTSPSLPSLP VIPRPHPPTS LSIPLPSASP HQHPPTLPSI  540
PSPPATPVIA QIAVDIGDNG GRSVPCAQVI STAAASVPTA AAEAVMRHLQ GAEDGVLAGV  600
PARVILHGDE KVRLLNAQRL FGTRNIRRFV QATLPEKRDD LMSSIKYEAQ VWARNPQYGA  660
TGVIWHLERK VERELAKLSK PRQKLEMCKN LAAKKSIPEA KGVGVRQVTS KEQEQERQYQ  720
ACPARISAWT PRLFVHRSAC EIPISQMESR IACM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-25LBD family protein