PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G23750.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 697aa    MW: 74420.6 Da    PI: 5.4056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G23750.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-06459481225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C ++ar G C  Gd C++ H
  OGLUM01G23750.3 459 KSKPCTHYAR-GSCLKGDDCPYDH 481
                      6789******.************* PP

2zf-CCCH31.14e-10487508526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  OGLUM01G23750.3 487 PCHNFMENGMCIRGDKCKFSHV 508
                      7********************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MEEPSPVPPA AAPATLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAACP  60
DAEVETAAAA IPPGVSGGLP HVVSPPPADV GGDRGKNLEV EVALGNPTPH ETPSTSASPD  120
AAANPTTDPG VVPQGTEEGR VAGVERVEGV EEVVFAGGTS GEADADGDEL GAGAGLMGDD  180
EALRSMQACL DGEDSELVIE MVGNDDEQLQ LDAMMNNLSG LIDDASACVM SAQSCGVSGD  240
KLQSDDRVAE EVKELGAGIG NDRSVCSLDH GSLDGGGGFE EGEIEGDTQN LDADDSGNSE  300
LQDDVELEED FDSRRIEEDG SCGHDVKSNL HLIPQKGNGD IARNMLCNSK GDSQMHVARA  360
QAVSYDEVLD WNETPLPDDK ALKHGNTRKR TLTEERKAKK TKTKRIKRAL QREAEGVKRL  420
KLQPVIKPKV VKVCHFYLHG KCQQGNLCKF SHDTTPLTKS KPCTHYARGS CLKGDDCPYD  480
HELSKYPCHN FMENGMCIRG DKCKFSHVIP TAEGPSTPDA KKSNASSVPE KANCQEQTSR  540
QKTSTVYSVE PATSAPIKHH SILKNLAGIS GNAQKVPVRI PRGIQFLPFN KDRPDSSILH  600
QDVVSTEKHK NPTGGPHQNF GRPQPADGEK LGKHNGHRSA PLLDEKDSSK QADLHPCSEP  660
KKNSLPTTAA VPSSVSTQHE VSEASRILQE FLFGSGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-06C3H family protein