PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G23470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 467aa MW: 47205.7 Da PI: 5.1513

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G23470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.3e-07	361	401	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L OGLUM01G23470.1 361 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 401 69****************966......*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MDRGFNEMIL SESVWNGGGG GGDGDGGAVV LPPEVGGVNA VDGSGMTVLE RLVLDEALAA 60 AILELQGIQA PGCGGGGGKV AVVPPPTAGD GGVEAAVAFA AMATGTPAYA DVDADVLQRQ 120 RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VPPPPPPPAF ATAAASVDGG GAMDATVFSG 180 IGNDDVVDAV SATVAMTTAT ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA 240 ADMSSQDNPL CSLLASNTAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGN 300 CGGGGGDDPL YEPDTEALAQ VKEMIYRAAA MRPVTLGAED AGERPRRRNV RISSDPQTVA 360 ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF LKSQIRELQT LDRRNYPNAA 420 MSINTAAATT MATSSSPTYN NSNAAMPAFA FPETLGCGGG GGVEQLI

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MDRGFNEMIL SESVWNGGGG GGDGDGGAVV LPPEVGGVNA VDGSGMTVLE RLVLDEALAA  60
AILELQGIQA PGCGGGGGKV AVVPPPTAGD GGVEAAVAFA AMATGTPAYA DVDADVLQRQ  120
RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VPPPPPPPAF ATAAASVDGG GAMDATVFSG  180
IGNDDVVDAV SATVAMTTAT ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA  240
ADMSSQDNPL CSLLASNTAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGN  300
CGGGGGDDPL YEPDTEALAQ VKEMIYRAAA MRPVTLGAED AGERPRRRNV RISSDPQTVA  360
ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF LKSQIRELQT LDRRNYPNAA  420
MSINTAAATT MATSSSPTYN NSNAAMPAFA FPETLGCGGG GGVEQLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	367	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-34	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G23470.1