PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G16000.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 386aa    MW: 40914.5 Da    PI: 5.4464
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G16000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.8e-141647839
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevavii 39
                     +r  tf++R+++++K A+ELSvLCda+vav++
  OGLUM01G16000.1 16 KRAATFARRKETVMKMAKELSVLCDAQVAVVV 47
                     6899**************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MPRAKTPMDL IPFPKKRAAT FARRKETVMK MAKELSVLCD AQVAVVVGDP GGGAAEKAAW  60
ESEEGVLDRY RALPPEVRAK RSLTHREYLR GELRKQRAKL AKVREEGAFK PWDDALDGIA  120
EEETRKLHKY LSDKIEAARA RMEAMGLQLG DVDDNGVNGD DGSGLDLQQH VPPSASDAKE  180
FESVPVVHGG QYIGSSSGGG GGGGGGDNQI QTTPAADGNS FVEQYVPHPW EWDHGTFPSQ  240
PQAVQPEHGI QYNAPMEGYP LQVPGNGLPD LAATGCIDAA AAAAAAATTA PARYPPTLDT  300
GRHGSFLAAP RAQPLAFSTA GADFINAPNN FLTTGVSDYS AQSSGYGIGN QINNAKQLLY  360
QMQMQYPVGG TGGADPSDTQ SKNRGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.12e-09M-type_MADS family protein