PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G13730.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 862aa MW: 95856.3 Da PI: 6.987

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G13730.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.5	3.4e-37	106	183	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+++ls+a++y++rhkvCevh+k+ vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn+rrrk q OGLUM01G13730.3 106 CCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQV 183 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS 60 PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR 120 DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK 180 VQVQAGVDVN SLHENHSLSN TLLLLLKQLS GLDSSGPSEQ INGPNYLTNL VKNLAALAGT 240 QRNQDMLKNA NSAAIASHTG NYVAKGNSLH DSRPHIPVGT ESTAEEPTVE RRVQNFDLND 300 AYVEGDENRT DKIVFKLFGK EPNDFPSDLR AQILSWLSNC PSDIESYIRP GCIILTIYMR 360 LPNWMWDKLA ADPAHWIQKL ISLSTDTLWR TGWMYARVQD YLTLSCNGNL MLASPWQPAI 420 GNKHQILFIT PIAVACSSTA NFSVKGLNIA QPTTKLLCVF GGKYLIQEAT EKLLDDTKMQ 480 RGPQCLTFSC SFPSTSGRGF IEVEDHDQSS LSFPFVVAEE DVCSEIRTLE HLLNLVSFDD 540 TLVEKNDLLA SRDRALNFLH EFGWFLQRSH IRATSETPKD CTEGFPAARF RWLLSFAVDR 600 EFCAVIKKLL DTLFQGGVDL DVQSTVEFVL KQDLVFVAVN KRSKPLIDFL LTYTTSSAPM 660 DGTESAAPAQ FLFTPDIAGP SDITPLHIAA TYSDTAGVLD ALTDDPQQLG IKAWKNARDA 720 TGLTPEDYAR KRGHESYIEM VQNKIDSRLP KAHVSVTISS TTSTTDFTEK HASQSKTTDQ 780 TAFDVEKGQQ ISTKPPLSCR QCLPELAYRH HLNRFLSTRP AVLSLVAIAA VCVCVGLIMQ 840 GPPHIGGMRG PFRWNSLRSG PK

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS  60
PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVNLSSAR  120
DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK  180
VQVQAGVDVN SLHENHSLSN TLLLLLKQLS GLDSSGPSEQ INGPNYLTNL VKNLAALAGT  240
QRNQDMLKNA NSAAIASHTG NYVAKGNSLH DSRPHIPVGT ESTAEEPTVE RRVQNFDLND  300
AYVEGDENRT DKIVFKLFGK EPNDFPSDLR AQILSWLSNC PSDIESYIRP GCIILTIYMR  360
LPNWMWDKLA ADPAHWIQKL ISLSTDTLWR TGWMYARVQD YLTLSCNGNL MLASPWQPAI  420
GNKHQILFIT PIAVACSSTA NFSVKGLNIA QPTTKLLCVF GGKYLIQEAT EKLLDDTKMQ  480
RGPQCLTFSC SFPSTSGRGF IEVEDHDQSS LSFPFVVAEE DVCSEIRTLE HLLNLVSFDD  540
TLVEKNDLLA SRDRALNFLH EFGWFLQRSH IRATSETPKD CTEGFPAARF RWLLSFAVDR  600
EFCAVIKKLL DTLFQGGVDL DVQSTVEFVL KQDLVFVAVN KRSKPLIDFL LTYTTSSAPM  660
DGTESAAPAQ FLFTPDIAGP SDITPLHIAA TYSDTAGVLD ALTDDPQQLG IKAWKNARDA  720
TGLTPEDYAR KRGHESYIEM VQNKIDSRLP KAHVSVTISS TTSTTDFTEK HASQSKTTDQ  780
TAFDVEKGQQ ISTKPPLSCR QCLPELAYRH HLNRFLSTRP AVLSLVAIAA VCVCVGLIMQ  840
GPPHIGGMRG PFRWNSLRSG PK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	59	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G13730.3