PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G13550.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 355aa    MW: 37771.4 Da    PI: 7.7035
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G13550.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.82.5e-19318354237
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+
  OGLUM01G13550.1 318 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQ 354
                      7***********************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MELRPPPPKH HHHRRRRGGG GEDGGEEEEE EAGRLSLRGG GFWRRHDGEE EEEKGGGRRG  60
EIKEVDFFLG ASGRDVVVAS RRHDDGFRGT THGGGGGGDV NIGLDLLTTT TAGAAAGGAA  120
AGAGEEDTGK NHRKEATTAA VDVELRRVVE ENRRLRGMLD ELTRSYSALY HQYLQVTQQQ  180
NHRHPDHHLI MNNNNNRPSL AQTHRTAATT TATTQQFLEP RASSTAQAAA DADMAASDDE  240
AGRGGGDGDA SSPSLSNAAA GGGGGGGNKM RRVGGQDETA AAAPARENGE QQAAAAAELP  300
CRKPRVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAIGCP VRKQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-31WRKY family protein