PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G13370.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 650aa MW: 68130.2 Da PI: 6.6739

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G13370.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.3e-16	401	447	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq OGLUM01G13370.1 401 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 447 5***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MHVFVFGSVF CVCRSDGNDF AELLWENGQA VVHGRKKHPQ PAFPPFGFFG GTGGGGGGSS 60 SRAQEKQPGG IDAFAKVGGG FGALGMAPAV HDFASGFGAT TQDNGDDDTV PWIHYPIIDD 120 EDAAAPAALA AADYGSDFFS ELQAAAAAAA AAAPPTDLAS LPASNHNGAT NNRNAPVANT 180 TTREPSKESH GGLSVPTTRA EPQPQPQLAA AKLPRSSGSG GGEGVMNFSL FSRPAVLARA 240 TLESAQRTQG TDNKASNVTA SNRVESTVVQ TASGPRSAPA FADQRAAAWP PQPKEMPFAS 300 TAAAPMAPAV NLHHEMGRDR AGRTMPVHRT ETRKAPEATV ATSSVCSGNG AGSDELWRQQ 360 KRKCQAQAEC SASQDDDLDD EPGVLRKSGT RSTKRSRTAE VHNLSERRRR DRINEKMRAL 420 QELIPNCNKI DKASMLDEAI EYLKTLQLQV QMMSMGTGLC IPPMLLPTAM QHLQIPPMAH 480 FPHLGMGLGY GMGVFDMSNT GALQMPPMPG AHFPCPMIPG ASPQGLGIPG TSTMPMFGVP 540 GQTILSSASS VPPFASLAGL PVRPSGVPQV SGAMANMVQD QQQGIANQQQ QCLNKEAIQG 600 ANPGDSQMQI IMQGDNENFR IPSSAQTKSS QFSDGTGKGT NARERDGAET

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MHVFVFGSVF CVCRSDGNDF AELLWENGQA VVHGRKKHPQ PAFPPFGFFG GTGGGGGGSS  60
SRAQEKQPGG IDAFAKVGGG FGALGMAPAV HDFASGFGAT TQDNGDDDTV PWIHYPIIDD  120
EDAAAPAALA AADYGSDFFS ELQAAAAAAA AAAPPTDLAS LPASNHNGAT NNRNAPVANT  180
TTREPSKESH GGLSVPTTRA EPQPQPQLAA AKLPRSSGSG GGEGVMNFSL FSRPAVLARA  240
TLESAQRTQG TDNKASNVTA SNRVESTVVQ TASGPRSAPA FADQRAAAWP PQPKEMPFAS  300
TAAAPMAPAV NLHHEMGRDR AGRTMPVHRT ETRKAPEATV ATSSVCSGNG AGSDELWRQQ  360
KRKCQAQAEC SASQDDDLDD EPGVLRKSGT RSTKRSRTAE VHNLSERRRR DRINEKMRAL  420
QELIPNCNKI DKASMLDEAI EYLKTLQLQV QMMSMGTGLC IPPMLLPTAM QHLQIPPMAH  480
FPHLGMGLGY GMGVFDMSNT GALQMPPMPG AHFPCPMIPG ASPQGLGIPG TSTMPMFGVP  540
GQTILSSASS VPPFASLAGL PVRPSGVPQV SGAMANMVQD QQQGIANQQQ QCLNKEAIQG  600
ANPGDSQMQI IMQGDNENFR IPSSAQTKSS QFSDGTGKGT NARERDGAET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	406	411	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-34	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G13370.1