PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G11800.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 499aa MW: 54111.4 Da PI: 7.4585

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G11800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.2	7.6e-14	79	116	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +kk+CnCk+s+Clk+YCeCfaag +C+ C+C++C N OGLUM01G11800.1 79 RKKHCNCKNSQCLKLYCECFAAGLYCDG-CHCKQCGNYV 116 689***********************.*****975 PP
2	TCR	51	3e-16	163	202	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC+dCkN e OGLUM01G11800.1 163 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCQDCKNFE 202 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MEKKQMQQQP QQPESEPEPA APAPAAAAAE AKATPPQPQP QQKPAAPVQP QMPTPRPWPV 60 AFIPPKPVAE IKSTPSTKRK KHCNCKNSQC LKLYCECFAA GLYCDGCHCK QCGNYVGNES 120 ARQEAINSTK QRNPKAFQPK IENGSNALNL RKDDAGAPAS LPKHNKGCHC KKSGCLKKYC 180 ECFQANILCS KNCKCQDCKN FEGSEELRLI TQGDNSSDRN NIQHAANVAL NGAIGSSGYR 240 YSPVRRKRPP EDHLYQKLNG EGSTMQTQFQ EANHVDSSEI TSSTGLEGCY SNYQSRSNVV 300 YRSALANTIS PTDATGLAKH LVIVCRKAAD AFLTTAENKG EMEVEGEIHT DSDGATNMDQ 360 QNGGDFGPCC NSLEDSRPAS PGTQALMCDE QGSTFGTDYR ISFPVALHDQ DTSELNAQQE 420 KAVLTGFRDY LRTVITRGKI NEANRSSEAA MQLDTRKHDE SATILPPLNA VEKEKLKVPD 480 GPESPKASPS ASNCGGQAS

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MEKKQMQQQP QQPESEPEPA APAPAAAAAE AKATPPQPQP QQKPAAPVQP QMPTPRPWPV  60
AFIPPKPVAE IKSTPSTKRK KHCNCKNSQC LKLYCECFAA GLYCDGCHCK QCGNYVGNES  120
ARQEAINSTK QRNPKAFQPK IENGSNALNL RKDDAGAPAS LPKHNKGCHC KKSGCLKKYC  180
ECFQANILCS KNCKCQDCKN FEGSEELRLI TQGDNSSDRN NIQHAANVAL NGAIGSSGYR  240
YSPVRRKRPP EDHLYQKLNG EGSTMQTQFQ EANHVDSSEI TSSTGLEGCY SNYQSRSNVV  300
YRSALANTIS PTDATGLAKH LVIVCRKAAD AFLTTAENKG EMEVEGEIHT DSDGATNMDQ  360
QNGGDFGPCC NSLEDSRPAS PGTQALMCDE QGSTFGTDYR ISFPVALHDQ DTSELNAQQE  420
KAVLTGFRDY LRTVITRGKI NEANRSSEAA MQLDTRKHDE SATILPPLNA VEKEKLKVPD  480
GPESPKASPS ASNCGGQAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	6e-88	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G11800.1