PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G11340.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 470aa MW: 49317.3 Da PI: 7.9939

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G11340.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	1.9e-10	56	82	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+++H++ OGLUM01G11340.1 56 PGEADCVYYLRTGACGYGENCRYNHPR 82 57899********************96 PP
2	zf-CCCH	37.3	4.7e-12	106	132	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++++GtCk+G++Ck+ H++ OGLUM01G11340.1 106 PGQPVCEYYMKNGTCKFGSNCKYDHPR 132 5789*********************96 PP
3	zf-CCCH	33.4	7.6e-11	151	176	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ +tG+Ck+G++CkF+H++ OGLUM01G11340.1 151 GEKDCTYYVKTGHCKFGSTCKFHHPE 176 5789********************96 PP
4	zf-CCCH	37.3	4.7e-12	304	330	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G+ Ck++H++ OGLUM01G11340.1 304 PGQPECQYYLKTGSCKFGSACKYHHPQ 330 5789*********************97 PP
5	zf-CCCH	28.6	2.5e-09	352	376	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +C ++ + G+Ck+G++CkF H++ OGLUM01G11340.1 352 SQPCAYYTQHGFCKFGPTCKFDHPM 376 679********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MEPYAAAEGG GGGGGGGGGG GSTDTGLEES MWRMGLGGGG GGGGEAVAAG RLPERPGEAD 60 CVYYLRTGAC GYGENCRYNH PRDRAAAAVL NGGGKTTHSA EYPERPGQPV CEYYMKNGTC 120 KFGSNCKYDH PREGSVQAVM LNSSGYPLRS GEKDCTYYVK TGHCKFGSTC KFHHPEIGGV 180 SETPNMYPPV QPQPISSSHP YQHLAGWQMG RPPVLPGSFL SGSYPPMMLP STVVPMQGWN 240 PYISPVNQVA SAGGHQTVQA GPFYGLSHQG PSAAVTYGSQ YAPLSSSTMP SSSSKQEPAF 300 PARPGQPECQ YYLKTGSCKF GSACKYHHPQ YLNTPKSNCM LSPLGLPLRP GSQPCAYYTQ 360 HGFCKFGPTC KFDHPMGTLS YSPSASSITD LPIAPYPLNY AVAPVAPPSS SSDLRPEYLL 420 TKEFSANQSA SPGTTCGPAG AMLKAYAPHM LIRPQTSGAG GMVTTHGGEL

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MEPYAAAEGG GGGGGGGGGG GSTDTGLEES MWRMGLGGGG GGGGEAVAAG RLPERPGEAD  60
CVYYLRTGAC GYGENCRYNH PRDRAAAAVL NGGGKTTHSA EYPERPGQPV CEYYMKNGTC  120
KFGSNCKYDH PREGSVQAVM LNSSGYPLRS GEKDCTYYVK TGHCKFGSTC KFHHPEIGGV  180
SETPNMYPPV QPQPISSSHP YQHLAGWQMG RPPVLPGSFL SGSYPPMMLP STVVPMQGWN  240
PYISPVNQVA SAGGHQTVQA GPFYGLSHQG PSAAVTYGSQ YAPLSSSTMP SSSSKQEPAF  300
PARPGQPECQ YYLKTGSCKF GSACKYHHPQ YLNTPKSNCM LSPLGLPLRP GSQPCAYYTQ  360
HGFCKFGPTC KFDHPMGTLS YSPSASSITD LPIAPYPLNY AVAPVAPPSS SSDLRPEYLL  420
TKEFSANQSA SPGTTCGPAG AMLKAYAPHM LIRPQTSGAG GMVTTHGGEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-115	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G11340.1