PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G10890.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 615aa    MW: 68155 Da    PI: 8.6323
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G10890.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08517538627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C++f rtGtCk+Gd+C++ H++
  OGLUM01G10890.4 517 CQHFVRTGTCKFGDSCRYFHPK 538
                      ********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    
MGSVGVAPSG LKNSSSTSMG AEKLPDQMHD LKIRDDKEVE ATIINGKGTE TGHIIVTTTG  60
GRNGQPKQTV SYMAERIVGQ GSFGIVFQAK CLETGETVAI KKVLQDKRYK NRELQTMRLL  120
DHPNVVALKH CFFSTTEKDE LYLNLVLEYV PETVHRVVKH YNKMNQRMPL IYVKLYMYQI  180
CRALAYIHNS IGVCHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNI SYICSRYYRA  240
PELIFGATEY TTAIDIWSAG CVLAELMLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM  300
NPNYTEFKFP QIKAHPWHKV FHKRLPPEAV DLVSRLLQYS PNLRCTAVEA LVHPFFDELR  360
DPNARLPNGR FLPPLFNFKP HELKGIPSDI MAKLIPEHVK KQCSYAGSLF AQQQKLLEGE  420
DQNSEELSRE RGEAAEGGKK GGGGRGSEMP LGKYYCDYCE KQFQDTPAAR KRHLDGAQHH  480
RARALWYDAV RRQELHGGGG GAPPLLHQPG AAAIGVCQHF VRTGTCKFGD SCRYFHPKPP  540
PANPGPAPSG PVSGPMAQQS NIQGSQPNFV GYQAADGSSF SGNILGGHTS WGNLPPSLRP  600
PPEGGYPPFP FVDWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437444GGKKGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-23C3H family protein