PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G10890.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 615aa MW: 68155 Da PI: 8.6323 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.1e-08 | 517 | 538 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd+C++ H++ OGLUM01G10890.3 517 CQHFVRTGTCKFGDSCRYFHPK 538 ********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence |
MGSVGVAPSG LKNSSSTSMG AEKLPDQMHD LKIRDDKEVE ATIINGKGTE TGHIIVTTTG 60 GRNGQPKQTV SYMAERIVGQ GSFGIVFQAK CLETGETVAI KKVLQDKRYK NRELQTMRLL 120 DHPNVVALKH CFFSTTEKDE LYLNLVLEYV PETVHRVVKH YNKMNQRMPL IYVKLYMYQI 180 CRALAYIHNS IGVCHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNI SYICSRYYRA 240 PELIFGATEY TTAIDIWSAG CVLAELMLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM 300 NPNYTEFKFP QIKAHPWHKV FHKRLPPEAV DLVSRLLQYS PNLRCTAVEA LVHPFFDELR 360 DPNARLPNGR FLPPLFNFKP HELKGIPSDI MAKLIPEHVK KQCSYAGSLF AQQQKLLEGE 420 DQNSEELSRE RGEAAEGGKK GGGGRGSEMP LGKYYCDYCE KQFQDTPAAR KRHLDGAQHH 480 RARALWYDAV RRQELHGGGG GAPPLLHQPG AAAIGVCQHF VRTGTCKFGD SCRYFHPKPP 540 PANPGPAPSG PVSGPMAQQS NIQGSQPNFV GYQAADGSSF SGNILGGHTS WGNLPPSLRP 600 PPEGGYPPFP FVDWG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 437 | 444 | GGKKGGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-23 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G10890.3 |