PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G10890.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 633aa    MW: 70084.3 Da    PI: 8.6295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G10890.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08535556627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C++f rtGtCk+Gd+C++ H++
  OGLUM01G10890.2 535 CQHFVRTGTCKFGDSCRYFHPK 556
                      ********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    
MGSVGVAPSG LKNSSSTSMG AEKLPDQMHD LKIRDDKEVE ATIINGKGTE TGHIIVTTTG  60
GRNGQPKQTV SYMAERIVGQ GSFGIVFQAK CLETGETVAI KKVLQDKRYK NRELQTMRLL  120
DHPNVVALKH CFFSTTEKDE LYLNLVLEYV PETVHRVVKH YNKMNQRMPL IYVKLYMYQI  180
CRALAYIHNS IGVCHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNI SYICSRYYRA  240
PELIFGATEY TTAIDIWSAG CVLAELMLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM  300
NPNYTEFKFP QIKAHPWHKV QSLSISVVIL SAIVQYQVFH KRLPPEAVDL VSRLLQYSPN  360
LRCTAVEALV HPFFDELRDP NARLPNGRFL PPLFNFKPHE LKGIPSDIMA KLIPEHVKKQ  420
CSYAGSLFAQ QQKLLEGEDQ NSEELSRERG EAAEGGKKGG GGRGSEMPLG KYYCDYCEKQ  480
FQDTPAARKR HLDGAQHHRA RALWYDAVRR QELHGGGGGA PPLLHQPGAA AIGVCQHFVR  540
TGTCKFGDSC RYFHPKPPPA NPGPAPSGPV SGPMAQQSNI QGSQPNFVGY QAADGSSFSG  600
NILGGHTSWG NLPPSLRPPP EGGYPPFPFV DWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1455462GGKKGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-23C3H family protein