PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G10890.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 633aa MW: 70084.3 Da PI: 8.6295 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.1e-08 | 535 | 556 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd+C++ H++ OGLUM01G10890.2 535 CQHFVRTGTCKFGDSCRYFHPK 556 ********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence |
MGSVGVAPSG LKNSSSTSMG AEKLPDQMHD LKIRDDKEVE ATIINGKGTE TGHIIVTTTG 60 GRNGQPKQTV SYMAERIVGQ GSFGIVFQAK CLETGETVAI KKVLQDKRYK NRELQTMRLL 120 DHPNVVALKH CFFSTTEKDE LYLNLVLEYV PETVHRVVKH YNKMNQRMPL IYVKLYMYQI 180 CRALAYIHNS IGVCHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNI SYICSRYYRA 240 PELIFGATEY TTAIDIWSAG CVLAELMLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM 300 NPNYTEFKFP QIKAHPWHKV QSLSISVVIL SAIVQYQVFH KRLPPEAVDL VSRLLQYSPN 360 LRCTAVEALV HPFFDELRDP NARLPNGRFL PPLFNFKPHE LKGIPSDIMA KLIPEHVKKQ 420 CSYAGSLFAQ QQKLLEGEDQ NSEELSRERG EAAEGGKKGG GGRGSEMPLG KYYCDYCEKQ 480 FQDTPAARKR HLDGAQHHRA RALWYDAVRR QELHGGGGGA PPLLHQPGAA AIGVCQHFVR 540 TGTCKFGDSC RYFHPKPPPA NPGPAPSGPV SGPMAQQSNI QGSQPNFVGY QAADGSSFSG 600 NILGGHTSWG NLPPSLRPPP EGGYPPFPFV DWG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 455 | 462 | GGKKGGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-23 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G10890.2 |