PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G10890.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 562aa MW: 62404.4 Da PI: 8.6921

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G10890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.8	1.9e-08	464	485	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd+C++ H++ OGLUM01G10890.1 464 CQHFVRTGTCKFGDSCRYFHPK 485 ********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MGAEKLPDQM HDLKIRDDKE VEATIINGKG TETGHIIVTT TGGRNGQPKQ TVSYMAERIV 60 GQGSFGIVFQ AKCLETGETV AIKKVLQDKR YKNRELQTMR LLDHPNHYNK MNQRMPLIYV 120 KLYMYQICRA LAYIHNSIGV CHRDIKPQNL LVNPHTHQLK LCDFGSAKVL VKGEPNISYI 180 CSRYYRAPEL IFGATEYTTA IDIWSAGCVL AELMLGQPLF PGESGVDQLV EIIKVLGTPT 240 REEIKCMNPN YTEFKFPQIK AHPWHKVFHK RLPPEAVDLV SRLLQYSPNL RCTAVEALVH 300 PFFDELRDPN ARLPNGRFLP PLFNFKPHEL KGIPSDIMAK LIPEHVKKQC SYAGSLFAQQ 360 QKLLEGEDQN SEELSRERGE AAEGGKKGGG GRGSEMPLGK YYCDYCEKQF QDTPAARKRH 420 LDGAQHHRAR ALWYDAVRRQ ELHGGGGGAP PLLHQPGAAA IGVCQHFVRT GTCKFGDSCR 480 YFHPKPPPAN PGPAPSGPVS GPMAQQSNIQ GSQPNFVGYQ AADGSSFSGN ILGGHTSWGN 540 LPPSLRPPPE GGYPPFPFVD WG

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MGAEKLPDQM HDLKIRDDKE VEATIINGKG TETGHIIVTT TGGRNGQPKQ TVSYMAERIV  60
GQGSFGIVFQ AKCLETGETV AIKKVLQDKR YKNRELQTMR LLDHPNHYNK MNQRMPLIYV  120
KLYMYQICRA LAYIHNSIGV CHRDIKPQNL LVNPHTHQLK LCDFGSAKVL VKGEPNISYI  180
CSRYYRAPEL IFGATEYTTA IDIWSAGCVL AELMLGQPLF PGESGVDQLV EIIKVLGTPT  240
REEIKCMNPN YTEFKFPQIK AHPWHKVFHK RLPPEAVDLV SRLLQYSPNL RCTAVEALVH  300
PFFDELRDPN ARLPNGRFLP PLFNFKPHEL KGIPSDIMAK LIPEHVKKQC SYAGSLFAQQ  360
QKLLEGEDQN SEELSRERGE AAEGGKKGGG GRGSEMPLGK YYCDYCEKQF QDTPAARKRH  420
LDGAQHHRAR ALWYDAVRRQ ELHGGGGGAP PLLHQPGAAA IGVCQHFVRT GTCKFGDSCR  480
YFHPKPPPAN PGPAPSGPVS GPMAQQSNIQ GSQPNFVGYQ AADGSSFSGN ILGGHTSWGN  540
LPPSLRPPPE GGYPPFPFVD WG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	391	GGKKGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	1e-23	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G10890.1