PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G10620.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 595aa MW: 61079.9 Da PI: 7.2931

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G10620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	311	369	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ OGLUM01G10620.1 311 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGTHNHP 369 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence
MDKGHLGGGG GGGGGLLALD ASPRPLGFLN LLSPPPFHRS TMEADDSGGG GGRARRSVEV 60 DFFSDEKKNM KKSRVSGGAA AEADDAKGPA AAGLAIKKED LTINLLPAGN NARSDRSMVV 120 DDDAASRSDH EEKSRSSNEL AAMQAELGRM NEENQRLRGM LTQVTTSYQA LQMHLVALMQ 180 QRPQMMQPPT QPEPPPPHQD GKAEGAVVPR QFLDLGPSSG AGGEAAEEPS NSSTEAGSPR 240 RSSSTGNKDQ ERGDSPDAPS TAAAWLPGRA MAPQMGAAGT AGKSHDQQAQ DANMRKARVS 300 VRARSEAPII ADGCQWRKYG QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRSILIT 360 TYEGTHNHPL PPAAMAMAST TSAAASMLLS GSMPSADGAA GLMSSNFLAR TVLPCSSSMA 420 TISASAPFPT VTLDLTHAPP GAPNAVPLNA ARPGAPAPQF QVPLPGGGMA PAFAVPPQVL 480 YNQSKFSGLQ MSSDSAEAAT AAAAAAAAQF AQPRPPIGQL PGPLSDTVSA AAAAITADPN 540 FTVALAAAIT SIIGGQHAAA AGNSNANNTN TNTTSNTNNT SSNNTTSNNT NSETQ

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence

MDKGHLGGGG GGGGGLLALD ASPRPLGFLN LLSPPPFHRS TMEADDSGGG GGRARRSVEV  60
DFFSDEKKNM KKSRVSGGAA AEADDAKGPA AAGLAIKKED LTINLLPAGN NARSDRSMVV  120
DDDAASRSDH EEKSRSSNEL AAMQAELGRM NEENQRLRGM LTQVTTSYQA LQMHLVALMQ  180
QRPQMMQPPT QPEPPPPHQD GKAEGAVVPR QFLDLGPSSG AGGEAAEEPS NSSTEAGSPR  240
RSSSTGNKDQ ERGDSPDAPS TAAAWLPGRA MAPQMGAAGT AGKSHDQQAQ DANMRKARVS  300
VRARSEAPII ADGCQWRKYG QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRSILIT  360
TYEGTHNHPL PPAAMAMAST TSAAASMLLS GSMPSADGAA GLMSSNFLAR TVLPCSSSMA  420
TISASAPFPT VTLDLTHAPP GAPNAVPLNA ARPGAPAPQF QVPLPGGGMA PAFAVPPQVL  480
YNQSKFSGLQ MSSDSAEAAT AAAAAAAAQF AQPRPPIGQL PGPLSDTVSA AAAAITADPN  540
FTVALAAAIT SIIGGQHAAA AGNSNANNTN TNTTSNTNNT SSNNTTSNNT NSETQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-101	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G10620.1