PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G08160.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 578aa MW: 59969.3 Da PI: 7.1525

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G08160.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.2	7.2e-35	207	307	2	86
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaessss 80 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l + ++++s++ ++s ++ OGLUM01G08160.1 207 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptaggagagnaAAPPSSSTHPDSAEN 300 79**************************************************************888888888888776555555553333333 PP TCP 81 sas.nss 86 s++ ++ OGLUM01G08160.1 301 SDDqAQA 307 3330222 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MSNPWDCVYY GIRRGGWTRI GAATVAAGKK AAGDLDPRHH HHRVTHGGDG GGVGGGGSGG 60 QEEADEQQQQ QHDHHRLLQL HHHQGVQQDQ EPPPVPVFHL QPASVRQLSG SSAEYALLSP 120 MGDAGGHSHH HQHGFQPQLL SFGGVGHHHH LHQFTAQPQP PAASHTRGRG GGGEIVPATT 180 TPRSRGGGGG GGGEIVAVQG GHIVRSTGRK DRHSKVCTAR GPRDRRVRLS AHTAIQFYDV 240 QDRLGYDRPS KAVDWLIKNA KDAIDKLDVL PAWQPTAGGA GAGNAAAPPS SSTHPDSAEN 300 SDDQAQAITV AHTAFDFAGG GSGGTSFLPP SLDSDAIADT IKSFFPMGGT AGGEASSSTA 360 AAQSSAMGFQ SYTPDLLSRT GSQSQELRLS LQSLPDPMFH HQQHRHGGGG GGGNGTTQQA 420 LFSGAANYSF GGGAMWATEQ QAQNQRMLPW NVPDPGGGGG AAYLFNVSQQ AAHMQAAAAA 480 LGGHQSQFFF QRGPLQSSNQ PSERGWPETV EADNQMSHHQ GGLSPSVSAA IGFAAPGIGF 540 SGFRLPARIQ GDEEHNGGGG GNGDKPPPPS SVSSASHH

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MSNPWDCVYY GIRRGGWTRI GAATVAAGKK AAGDLDPRHH HHRVTHGGDG GGVGGGGSGG  60
QEEADEQQQQ QHDHHRLLQL HHHQGVQQDQ EPPPVPVFHL QPASVRQLSG SSAEYALLSP  120
MGDAGGHSHH HQHGFQPQLL SFGGVGHHHH LHQFTAQPQP PAASHTRGRG GGGEIVPATT  180
TPRSRGGGGG GGGEIVAVQG GHIVRSTGRK DRHSKVCTAR GPRDRRVRLS AHTAIQFYDV  240
QDRLGYDRPS KAVDWLIKNA KDAIDKLDVL PAWQPTAGGA GAGNAAAPPS SSTHPDSAEN  300
SDDQAQAITV AHTAFDFAGG GSGGTSFLPP SLDSDAIADT IKSFFPMGGT AGGEASSSTA  360
AAQSSAMGFQ SYTPDLLSRT GSQSQELRLS LQSLPDPMFH HQQHRHGGGG GGGNGTTQQA  420
LFSGAANYSF GGGAMWATEQ QAQNQRMLPW NVPDPGGGGG AAYLFNVSQQ AAHMQAAAAA  480
LGGHQSQFFF QRGPLQSSNQ PSERGWPETV EADNQMSHHQ GGLSPSVSAA IGFAAPGIGF  540
SGFRLPARIQ GDEEHNGGGG GNGDKPPPPS SVSSASHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-54	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G08160.1