PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G07550.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 348aa MW: 36172.2 Da PI: 6.4961

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G07550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18	6.2e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e e++ C ++ lC+ C l+ H H + OGLUM01G07550.1 4 LCSACEAAEARVLCCADDAALCARCDLHVHAAnrlagkHHR 44 7****99*******************55678888554 PP
2	zf-B_box	30.3	8.7e-10	60	100	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ +++ ++ +fC +++ llC+ C ++ H H OGLUM01G07550.1 60 PPTCDICQDAHAYFFCVEDRALLCRACDVAVHTAnalvsaH 100 789***************************99545566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MKVLCSACEA AEARVLCCAD DAALCARCDL HVHAANRLAG KHHRLPLLSS SSSSSSSPSP 60 PTCDICQDAH AYFFCVEDRA LLCRACDVAV HTANALVSAH RRFLLTGVHV GLDAAADDDD 120 KHPPHPLSSS PPRNTAPPPQ PPPKRSPSPI YSDDDVIDWA TGGHDIGITG NLPDWSLVDE 180 QFNTPALPPV VTKTPPKRAS RGPVTAGTAA AVFGNLAGGS PDWPLNEFFG FAENGTSKAD 240 SGKIGSMDGS PNGGRSSSSS SSSSAAAAAG GGGQDFFGQV PEVHWAVPEL PSPPTASGLH 300 WQRDPRYGGG ATDAGAVFVP DISSPENPFR CFAAAAAGDH TMKRRRRC

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MKVLCSACEA AEARVLCCAD DAALCARCDL HVHAANRLAG KHHRLPLLSS SSSSSSSPSP  60
PTCDICQDAH AYFFCVEDRA LLCRACDVAV HTANALVSAH RRFLLTGVHV GLDAAADDDD  120
KHPPHPLSSS PPRNTAPPPQ PPPKRSPSPI YSDDDVIDWA TGGHDIGITG NLPDWSLVDE  180
QFNTPALPPV VTKTPPKRAS RGPVTAGTAA AVFGNLAGGS PDWPLNEFFG FAENGTSKAD  240
SGKIGSMDGS PNGGRSSSSS SSSSAAAAAG GGGQDFFGQV PEVHWAVPEL PSPPTASGLH  300
WQRDPRYGGG ATDAGAVFVP DISSPENPFR CFAAAAAGDH TMKRRRRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-29	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G07550.1