PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G07510.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 275aa    MW: 30787.7 Da    PI: 9.4035
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G07510.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.8e-314998150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  OGLUM01G07510.2 49 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 98
                     79***********************************************8 PP
2K-box102.55.5e-341172134100
            K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      s++   ++e +a+++qqe++kL+++i++Lq+ +R ++G++++++sl++L+q+e++Lek++ kiR++Knell++++e++qk+e elq++n++Lr+
  OGLUM01G07510.2 117 SNS-GtVAEVNAQHYQQESSKLRQQISSLQNANRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRS 209
                      333.25999************************************************************************************* PP

            K-box  97 klee 100
                      k++e
  OGLUM01G07510.2 210 KVAE 213
                      *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MMNMMTDLSC GPSSMTELTA AAAPAGSGSS AAVAAGSSEK MGRGKIEIKR IENTTNRQVT  60
FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN SVKSTVERYK KANSDTSNSG  120
TVAEVNAQHY QQESSKLRQQ ISSLQNANRT IVGDSINTMS LRDLKQVENR LEKGIAKIRA  180
RKNELLYAEV EYMQKREVEL QNDNMYLRSK VAENERGQQP LNMMGAASTS EYDHMVNNPY  240
DSRNFLQVNI MQQPQHYAHQ LQPTTLQLGQ QPAFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-105MIKC_MADS family protein