PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G07380.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 897aa    MW: 96963 Da    PI: 6.5042
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G07380.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.8e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OGLUM01G07380.3 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START150.31.7e-471794112204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT....... CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg....... 88 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g       
  OGLUM01G07380.3 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVVNVLPAGangtiel 271
                      789*******************************************************.8888888888************************* PP

                      .................EEEEEEE...EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEEC CS
            START  89 .................galqlmv...aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepks 158
                                       ++l l +    +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p++
  OGLUM01G07380.3 272 lymqarthkpensepepEILKLKFvfdLQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSD 365
                      *****************555555422269999**************************************999999****************** PP

                      TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
            START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                      +g+s +++v+h+dl+ +++++++r+l++s+++ ++k+ +a+l++++
  OGLUM01G07380.3 366 GGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKISMAALRYLR 411
                      ******************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGRM  120
RRVPAFPPQA AAPAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQARTHK PENSEPEPEI LKLKFVFDLQ  300
LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RGEMLPSGFL  360
IRPSDGGGSV IHIVDHMDLE PWSVPEVVRP LYESSAMVAQ KISMAALRYL RQVAHEDTRS  420
VITGWGRQPA ALRALSQKLT RGFNETLNGL ADDGWSVIES DGVDDVCISV NSSKVIGCNA  480
TFSSGLPIVS TGVLCAKASM LLQDVSPPSL LQFLREHRSQ WADSNLDAFF ASAMKPNFCN  540
LPMSRLGGFS GQVILPLAHT FEPEEFLEVI KLGNASNYQD TLVHRDLFLL QMYNGVEESS  600
AGTCSELIFA PIDASFSDDS PLLPSGFRII PIDSPLDTSS PNCTLDLAST LEAATPRSRI  660
SGVNGGGGGG CAAAAASSKA VMTIAFQFAF DGHLQDSVAA MARQYMRSII SSVQRIAVAL  720
SSSRLVPPAG AGGGAAPQLA PANPEAATLP RWICQSFRFH FGAELIKSVD ANSSSESILK  780
AVWHHPSAIL CCSLKAMPVF TFANQSGLDM LETTLVALQD MTLEKVFDDQ GRKNLCTELP  840
NIMEQGMACM EGGVCVSSVG RAASYEKAVA WKVVDGDGGG GGGAHCICFM FINWTFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein