PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM01G07380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 856aa MW: 92342.7 Da PI: 6.6273 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.2e-19 | 12 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ OGLUM01G07380.1 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70 6789*****************************************************97 PP | |||||||
2 | START | 138.9 | 5.1e-44 | 179 | 370 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 +aee+++e+++ka+ ++ W +++ +++g++++ +++ s+++ g a+ra+g+v m++a v+e+l+d++ W +++++++++ OGLUM01G07380.1 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258 789*******************************************************.8888888888*******88776............. PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +l+a+++l+p Rdf+ +Ry+ l +g++v++++S++s+q p+ ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l+ OGLUM01G07380.1 259 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLY 351 .799***************************************999999********************************************* PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+++ ++k+ +a+l++++ OGLUM01G07380.1 352 ESSAMVAQKISMAALRYLR 370 ***************9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 856 aa Download sequence |
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 60 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGRM 120 RRVPAFPPQA AAPAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA 180 EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE 240 ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRYTSI LDDGSLVVCE RSLSSKQGGP 300 SMPLVQPFIR GEMLPSGFLI RPSDGGGSVI HIVDHMDLEP WSVPEVVRPL YESSAMVAQK 360 ISMAALRYLR QVAHEDTRSV ITGWGRQPAA LRALSQKLTR GFNETLNGLA DDGWSVIESD 420 GVDDVCISVN SSKVIGCNAT FSSGLPIVST GVLCAKASML LQDVSPPSLL QFLREHRSQW 480 ADSNLDAFFA SAMKPNFCNL PMSRLGGFSG QVILPLAHTF EPEEFLEVIK LGNASNYQDT 540 LVHRDLFLLQ MYNGVEESSA GTCSELIFAP IDASFSDDSP LLPSGFRIIP IDSPLDTSSP 600 NCTLDLASTL EAATPRSRIS GVNGGGGGGC AAAAASSKAV MTIAFQFAFD GHLQDSVAAM 660 ARQYMRSIIS SVQRIAVALS SSRLVPPAGA GGGAAPQLAP ANPEAATLPR WICQSFRFHF 720 GAELIKSVDA NSSSESILKA VWHHPSAILC CSLKAMPVFT FANQSGLDML ETTLVALQDM 780 TLEKVFDDQG RKNLCTELPN IMEQGMACME GGVCVSSVGR AASYEKAVAW KVVDGDGGGG 840 GGAHCICFMF INWTFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM01G07380.1 |