PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06440.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 392aa    MW: 41762.9 Da    PI: 7.103
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06440.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08124144526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C +aHg
  OGLUM01G06440.1 124 ACPDFRK-GGCKRGDACEYAHG 144
                      7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MMMMGEGVSS VPPWSHLPVS GVDVLGGGGG GGGGGDEMTP YLIAALRDYL PANDVGVGAD  60
DEEEAAAMAA AVDAYACDEF RMYEFKVRRC ARGRSHDWTE CPFAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCKRGDACE YAHGVFECWL HPARYRTQPC KDGTACRRRV CFFAHTPDQL  180
RVLPAQQSSP RSVASSPLAE SYDGSPLRRQ AFESYLTKTI MSSSPTSTLM SPPKSPPSES  240
PPLSPDGAAA IRRGSWPGVG SPVNDVLASF RQLRLNKVKS SPSGGWSYPS SSAVYGSPKA  300
ATGLYSLPTT PLASTATVTT ASSFMPNLEP LDLGLIGDEE PVQRVESGRA LREKVFERLS  360
RDGAISGAAT AFAAAATAGV GLDVDWVSDL IN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-78C3H family protein