PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G06080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 507aa MW: 52082.1 Da PI: 6.6962

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G06080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.3e-29	237	296	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+H h+ OGLUM01G06080.1 237 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCADDMSILITTYEGTHSHP 296 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MDVVVESPPV RDEKKVDVAA IGGAPPIVFE SFAPSTQRDS TIIKKEENME AAKAEMGEVR 60 EENERLKTML TRIVSDYKSL HTHFLDVVKV KEQTAAELAG DDDDDEPDDL VSLSLCTRPN 120 AAAARRKGHE RTPSSGGGGD DGRLSLGLSC ARGGVASDDD DDKQASRRAL PPMPVLNLSS 180 DSSGDAAGAG AGEPTQTNKA SRSSSGGGDG ADDEVLQQQQ AKKARVSVRV KCDTPTMNDG 240 CQWRKYGQKI SKGNPCPRAY YRCTVAPNCP VRKQVQRCAD DMSILITTYE GTHSHPLPPP 300 AAAMASTTSA AAAMLTSGST TSTMHGGGGV HHHLPFASAV GGGGGVGLLG PTTISTATSC 360 PTVTLDLTAP HSLLHPSSAS PYAAAAAGYE SSRALPAAWS SGYLAYGGAA AAQPYYAKGV 420 APSPFGHHFS MMGMAAAAAR PAPEQLFGGQ TTSPYLQRAI GGGGVAPAAV TDTIAKAITS 480 DPSFQSVLAA AITSYMGRGG GAAAPNK

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MDVVVESPPV RDEKKVDVAA IGGAPPIVFE SFAPSTQRDS TIIKKEENME AAKAEMGEVR  60
EENERLKTML TRIVSDYKSL HTHFLDVVKV KEQTAAELAG DDDDDEPDDL VSLSLCTRPN  120
AAAARRKGHE RTPSSGGGGD DGRLSLGLSC ARGGVASDDD DDKQASRRAL PPMPVLNLSS  180
DSSGDAAGAG AGEPTQTNKA SRSSSGGGDG ADDEVLQQQQ AKKARVSVRV KCDTPTMNDG  240
CQWRKYGQKI SKGNPCPRAY YRCTVAPNCP VRKQVQRCAD DMSILITTYE GTHSHPLPPP  300
AAAMASTTSA AAAMLTSGST TSTMHGGGGV HHHLPFASAV GGGGGVGLLG PTTISTATSC  360
PTVTLDLTAP HSLLHPSSAS PYAAAAAGYE SSRALPAAWS SGYLAYGGAA AAQPYYAKGV  420
APSPFGHHFS MMGMAAAAAR PAPEQLFGGQ TTSPYLQRAI GGGGVAPAAV TDTIAKAITS  480
DPSFQSVLAA AITSYMGRGG GAAAPNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	231	KKARVSVRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-43	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G06080.1