PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G05240.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 602aa MW: 66138.8 Da PI: 7.3163

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G05240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	56	81	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C +f +G C + d C+FaHg OGLUM01G05240.1 56 YKTRVCETFVTSGRCMFEDGCTFAHG 81 9************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MAGRGGMEWE VGRRRDSEDV IVLSPGPPAR RRPPPVKAVE PDSGGFAYEP PEKLFYKTRV 60 CETFVTSGRC MFEDGCTFAH GDEELRPSLT ACAGGWRKPS PSLAAPPVAV AVAPTPPPAQ 120 VVHELLARGS GSGGGHRAIT KVCFEFRDKG TCYFGETCAF PHVSAAEIRQ GSRLSSMSSS 180 SWEMPARRSV AVTVPRTFVS VPPVAPPPPH YRVNNNSSSS SGYNAASMAA AAPPAASDAN 240 LVAQQQPPEQ GGRKMTRLEM LSLKKMTGIY GDWLEGAIEH YLNAGVVSIK LWMNRFDYRG 300 LMQPFDGICE IPIIKLRPYQ LNYYNQEAVG KGQHRWGKWF DLSIAQEKLV NSTGGSTASS 360 SHLVYPSKSK RLSWHPRIFL YEGFLSDMEC DHLVSTGRGN MESSLAFTDG DRNSSYNNIE 420 DIVVSKIEDR ISLWSFLPKE NGENIQVLKY GVNRRGSIKE EPKSSTGGHW LATILIYLSD 480 VKQGGETVFP RSEMKDAQAK EGAPSQCSGY AVRPAKGNAI LLFNLRPDGE IDKDSQYEEC 540 PVLEGEKWLA IKHIHLRKLD SPKSSLASED ECTDEDDRCV SWAASGLSNL ILSAYNHEKI 600 IT

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MAGRGGMEWE VGRRRDSEDV IVLSPGPPAR RRPPPVKAVE PDSGGFAYEP PEKLFYKTRV  60
CETFVTSGRC MFEDGCTFAH GDEELRPSLT ACAGGWRKPS PSLAAPPVAV AVAPTPPPAQ  120
VVHELLARGS GSGGGHRAIT KVCFEFRDKG TCYFGETCAF PHVSAAEIRQ GSRLSSMSSS  180
SWEMPARRSV AVTVPRTFVS VPPVAPPPPH YRVNNNSSSS SGYNAASMAA AAPPAASDAN  240
LVAQQQPPEQ GGRKMTRLEM LSLKKMTGIY GDWLEGAIEH YLNAGVVSIK LWMNRFDYRG  300
LMQPFDGICE IPIIKLRPYQ LNYYNQEAVG KGQHRWGKWF DLSIAQEKLV NSTGGSTASS  360
SHLVYPSKSK RLSWHPRIFL YEGFLSDMEC DHLVSTGRGN MESSLAFTDG DRNSSYNNIE  420
DIVVSKIEDR ISLWSFLPKE NGENIQVLKY GVNRRGSIKE EPKSSTGGHW LATILIYLSD  480
VKQGGETVFP RSEMKDAQAK EGAPSQCSGY AVRPAKGNAI LLFNLRPDGE IDKDSQYEEC  540
PVLEGEKWLA IKHIHLRKLD SPKSSLASED ECTDEDDRCV SWAASGLSNL ILSAYNHEKI  600
IT

Link Out ? help Back to Top
Ensembl	OGLUM01G05240.1