PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM01G04860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 21650 Da PI: 4.2623 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.4e-13 | 13 | 53 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + E e ++ + k+lG++ W+ Ia++m+ gRt++++k++w++ OGLUM01G04860.1 13 ISDREAETIISLQKLLGNR-WSVIAAKMP-GRTDNEIKNYWNS 53 577899*************.*********.***********95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence |
MNYLRPDLKK EPISDREAET IISLQKLLGN RWSVIAAKMP GRTDNEIKNY WNSRIRKRQS 60 AAAGSGGCPT TGTVMEKEPT ANAATVAAAP EAASPPPPPI PARLPMFSCQ LLDGGGGAAA 120 TTQSPPNAGS SDISEVSACG GNGRGEDSSR DYCFSGGDVD GDGDMVHLLA LDDLDLLVDV 180 PGLLDVDAWD CELYRADYST SSSMSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.2 | 2e-22 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM01G04860.1 |