PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G04180.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-X1

Protein Properties

Length: 906aa MW: 99352.3 Da PI: 8.4426

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G04180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.2	1.3e-06	259	276	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C CH GpCppC OGLUM01G04180.1 259 CGIHRCPVDCHDGPCPPC 276 ****************** PP
2	zf-NF-X1	16.5	1.8e-05	366	385	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCpp.Cp 19 CG+HkC + CH+G C + C+ OGLUM01G04180.1 366 CGRHKCPERCHRGSCVEtCR 385 ***************99997 PP
3	zf-NF-X1	16.5	1.9e-05	419	438	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C + C+eG+C pCp+ OGLUM01G04180.1 419 CGRHACRRRCCEGDCAPCPE 438 ******************96 PP
4	zf-NF-X1	22.3	2.9e-07	446	465	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC ++CH+G C pCp+ OGLUM01G04180.1 446 CGNHKCLSPCHRGACAPCPL 465 ******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence
MPFSYAAAAS GSASSSRKPV PAAARRPVPS PAAAAAPAPS PSNPSAVSDS DPSSYSSSGE 60 ETDLTASDPA AASVISSYLS VAGDGADLSK VGIFLSSAAR RRSPPCLICF DPIRPSDPVW 120 SCSASCFALL HLHCIQSWAH QSSSAAPSPT WGCPKCRFPY PKSQTPTSYL CFCSKTVDPA 180 PDPWILPHSC GDVCGRRLNA DRDSGCEHNC LLLCHPGPCP PCPAIVPNAM CFCGSHRETR 240 RCSHQRYSCS GKCNKRLGCG IHRCPVDCHD GPCPPCAVRG KHKCECGETM EERLCSERVF 300 QCKRECGGML QCGKHSCERG CHAGKCGGCP LQGRRTCPCG KKDYPSSDCD AEAATCGSTC 360 EKVLGCGRHK CPERCHRGSC VETCRLVITK SCRCGGLKKE VPCYQELTCE RKCQRLRNCG 420 RHACRRRCCE GDCAPCPEVC DKRLRCGNHK CLSPCHRGAC APCPLMKTIS CNCGQTFFEV 480 PCGTEKNQKP PKCSKKCNIA RLCRHKLECR PHKCHYGACP PCKLICGEEL SCGHRCKLRC 540 HGPIAPPNPE FTLKPIKRKK EKHIDSTPGT PCPPCQEVVL VPCFGQHLGQ ERAILCSKRR 600 QFPCQNLCGN PLNCGNHYCT KACHVLQIPL SQPEGDQSAI LSLASASAFA EPCEECNLPC 660 QRVREPPCSH PCPLPCHLND CPPCKALVKR PCHCGAMVHA FECMYYNNLN ATKQQKVRSC 720 GGPCHRKLPN CPHLCSEICH PGQCPSVDQC MKKVNVRCAC NTLKKEWICQ DVLKEYRQSG 780 RDPKQIPKNQ YAVGLLACGE DCVKKVKAAD SELHLRKIQE IKTPAVEVEN VPKRRKRRNR 840 GQESVESSKF QEIKAVALKF LLVIFLCIIA VAGLYLLWKG VYRLSDWMNE MEEQRARQRH 900 LKPGRL

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence

MPFSYAAAAS GSASSSRKPV PAAARRPVPS PAAAAAPAPS PSNPSAVSDS DPSSYSSSGE  60
ETDLTASDPA AASVISSYLS VAGDGADLSK VGIFLSSAAR RRSPPCLICF DPIRPSDPVW  120
SCSASCFALL HLHCIQSWAH QSSSAAPSPT WGCPKCRFPY PKSQTPTSYL CFCSKTVDPA  180
PDPWILPHSC GDVCGRRLNA DRDSGCEHNC LLLCHPGPCP PCPAIVPNAM CFCGSHRETR  240
RCSHQRYSCS GKCNKRLGCG IHRCPVDCHD GPCPPCAVRG KHKCECGETM EERLCSERVF  300
QCKRECGGML QCGKHSCERG CHAGKCGGCP LQGRRTCPCG KKDYPSSDCD AEAATCGSTC  360
EKVLGCGRHK CPERCHRGSC VETCRLVITK SCRCGGLKKE VPCYQELTCE RKCQRLRNCG  420
RHACRRRCCE GDCAPCPEVC DKRLRCGNHK CLSPCHRGAC APCPLMKTIS CNCGQTFFEV  480
PCGTEKNQKP PKCSKKCNIA RLCRHKLECR PHKCHYGACP PCKLICGEEL SCGHRCKLRC  540
HGPIAPPNPE FTLKPIKRKK EKHIDSTPGT PCPPCQEVVL VPCFGQHLGQ ERAILCSKRR  600
QFPCQNLCGN PLNCGNHYCT KACHVLQIPL SQPEGDQSAI LSLASASAFA EPCEECNLPC  660
QRVREPPCSH PCPLPCHLND CPPCKALVKR PCHCGAMVHA FECMYYNNLN ATKQQKVRSC  720
GGPCHRKLPN CPHLCSEICH PGQCPSVDQC MKKVNVRCAC NTLKKEWICQ DVLKEYRQSG  780
RDPKQIPKNQ YAVGLLACGE DCVKKVKAAD SELHLRKIQE IKTPAVEVEN VPKRRKRRNR  840
GQESVESSKF QEIKAVALKF LLVIFLCIIA VAGLYLLWKG VYRLSDWMNE MEEQRARQRH  900
LKPGRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	832	838	PKRRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G04180.1