PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G02850.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 323aa    MW: 35895.1 Da    PI: 6.8952
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G02850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.4e-1366114155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  OGLUM01G02850.1  66 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 114
                      78****9888.8*********......44*************************98 PP
2B391.18.1e-29179272185
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+++
  OGLUM01G02850.1 179 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRS 272
                      89*****************************999855667999************************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEELAAME EDELIHVVQA AELRLPSSTT  60
ATRPSSRYKG VVPQPNGRWG AQIYERHARV WLGTFPDEEA AARAYDVAAL RFRGRDAVTN  120
RAPAAEGASA GELAFLAAHS KAEVVDMLRK HTYDDELQQG LRRGSRAQPT PRWAREPLFE  180
KAVTPSDVGK LNRLVVPKQQ AERHFPFPLR RHSSDAAGKG VLLNFEDGDG KVWRFRYSYW  240
NSSQSYVLTK GWSRFVREKG LRPGDTVAFS RSAAAWGTEK HLLIDCKKME RNNLATVDAI  300
AVDDDARVVV KLFGVDIAGD KTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-92RAV family protein