PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G02100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 307aa    MW: 32324.4 Da    PI: 7.1533
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G02100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260994.5e-314106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q
  OGLUM01G02100.1   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQANATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallk 98 
                      +++e +l++
  OGLUM01G02100.1  98 SAVESVLRG 106
                      **9988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQANATVF LAKFYGRAGL INLITAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPSATAVP  120
PLPTCDIRHV GARRGDVHGA AAGPVADLHR LDISSRAKFK RPGGGGAAAH RSDHAAFELV  180
FSKPAAAMAV DVIRQAQPLN WAPGALSHES ASHDAAPPES EGHSNDTADT VDGSHVSQSE  240
PEPRATSAAT EVHDAGLDLT LGLPPPPPPV QKTEPADSDG GSQQQHDHRK EKPVELGLAI  300
STSVAAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-69LBD family protein