PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu064585.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 975aa MW: 106555 Da PI: 5.6895

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu064585.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.6e-06	581	601	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++ G+C++G+ C F+H Oeu064585.1 581 PCNNYTSQGFCSRGSDCLFSH 601 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence
MENSTELGTL KSPQNILFAP PARRRPLRSR TYCSLIQILS HCHNDLQHSQ SPQPVPQAQT 60 VGYNGAVECG QVTEHNELTK HEEMKWENLL VQQEPVADKS KESIDAQGGG LSGKQKDVPD 120 MVHTNVAAEF NGQVVQANSI VRKDSVIDEA QTSDCSIKSV NELENVNCIP EQVALANSNI 180 HRDLVLDEAQ TSNCAIKSVD ELENGNRVSE QLQVVLANNT IHGASVINKP QTSDCIIRNV 240 DELENVNCVP EFQMEDIGPS REPESNKGVC TVEVFEAINS CLGIDTSSES SKLGENCEGK 300 GSSLDRSTSK EVEDQLRLKE IEFEKLISNS GSIDFSNCVT ANEEIEEGEI SGEPGVYNDL 360 MDELFEDSML LEERTTEEGQ ISGVDKEVFT WDDEDRGFIS SALDRMDDDN DPMEVDIVRK 420 KQDSLYQTIV HNSAMDTQNI DPTGASLENL SAHGEIFQEN NLEKQVSVPG EQVASGDKKK 480 KKKGPLTKER RAKKKKKDRI KRAEKNRKLG VKRLKLQPVL KPKTITYCRH YLKGRCLEGE 540 KCNFSHDTIP LTKSKPCCHF ARHSCMKGDD CPFDHQLSKY PCNNYTSQGF CSRGSDCLFS 600 HKLLADSSSP ASNVSKSELK SEQQMMLATK GSFTTSNLTK LEAKAPSLLT NSKPDKHLNI 660 HASSPQNADA EFSSAIDSPG KSVEQHVSNP AQGAAAQAPK GVNFLFHAKS LLGDSSKHKQ 720 AGLSLKADVG NNVVSDTMFE VSGNIQKPKE ISKIAPPRKP AGINFLSFGK VPSDDSNGKK 780 FSRLFSSENN EIEMSSLDDS TKAKQACFSQ KSCDDVKVDS QTSESTVDLV QNMKENAQRT 840 STVASPWGTN FLSFDKGPLN DSSVKNQAGL RPSDGNILLP FVQPKEVTPD RLQIPTKMPS 900 NPFGLSIDPS AAGCSQSISS SSKTSFLSNT PSSVQKAVQS TLAFAAKFKP EIKLSRSIGS 960 LDVRGNINRE AGNS*

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence

MENSTELGTL KSPQNILFAP PARRRPLRSR TYCSLIQILS HCHNDLQHSQ SPQPVPQAQT  60
VGYNGAVECG QVTEHNELTK HEEMKWENLL VQQEPVADKS KESIDAQGGG LSGKQKDVPD  120
MVHTNVAAEF NGQVVQANSI VRKDSVIDEA QTSDCSIKSV NELENVNCIP EQVALANSNI  180
HRDLVLDEAQ TSNCAIKSVD ELENGNRVSE QLQVVLANNT IHGASVINKP QTSDCIIRNV  240
DELENVNCVP EFQMEDIGPS REPESNKGVC TVEVFEAINS CLGIDTSSES SKLGENCEGK  300
GSSLDRSTSK EVEDQLRLKE IEFEKLISNS GSIDFSNCVT ANEEIEEGEI SGEPGVYNDL  360
MDELFEDSML LEERTTEEGQ ISGVDKEVFT WDDEDRGFIS SALDRMDDDN DPMEVDIVRK  420
KQDSLYQTIV HNSAMDTQNI DPTGASLENL SAHGEIFQEN NLEKQVSVPG EQVASGDKKK  480
KKKGPLTKER RAKKKKKDRI KRAEKNRKLG VKRLKLQPVL KPKTITYCRH YLKGRCLEGE  540
KCNFSHDTIP LTKSKPCCHF ARHSCMKGDD CPFDHQLSKY PCNNYTSQGF CSRGSDCLFS  600
HKLLADSSSP ASNVSKSELK SEQQMMLATK GSFTTSNLTK LEAKAPSLLT NSKPDKHLNI  660
HASSPQNADA EFSSAIDSPG KSVEQHVSNP AQGAAAQAPK GVNFLFHAKS LLGDSSKHKQ  720
AGLSLKADVG NNVVSDTMFE VSGNIQKPKE ISKIAPPRKP AGINFLSFGK VPSDDSNGKK  780
FSRLFSSENN EIEMSSLDDS TKAKQACFSQ KSCDDVKVDS QTSESTVDLV QNMKENAQRT  840
STVASPWGTN FLSFDKGPLN DSSVKNQAGL RPSDGNILLP FVQPKEVTPD RLQIPTKMPS  900
NPFGLSIDPS AAGCSQSISS SSKTSFLSNT PSSVQKAVQS TLAFAAKFKP EIKLSRSIGS  960
LDVRGNINRE AGNS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	478	497	KKKKKKGPLTKERRAKKKKK
2	478	501	KKKKKKGPLTKERRAKKKKKDRIK
3	479	498	KKKKKKGPLTKERRAKKKKK
4	479	502	KKKKKKGPLTKERRAKKKKKDRIK
5	480	499	KKKKKKGPLTKERRAKKKKK
6	480	503	KKKKKKGPLTKERRAKKKKKDRIK
7	481	500	KKKKKKGPLTKERRAKKKKK
8	490	498	RRAKKKKKD
9	493	523	KKKKKDRIKRAEKNRKLGVKRLKLQPVLKPK
10	494	524	KKKKKDRIKRAEKNRKLGVKRLKLQPVLKPK