PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu064392.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 637aa MW: 69275 Da PI: 8.1681

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu064392.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	255	275	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + GtC Gd+C +aHg Oeu064392.1 255 PCPEFKK-GTCAKGDSCEYAHG 275 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MEAEIQENKR RAGFKSCSKL LALAAMDDLA SFISLVEEKG SNFDEVSIWY GRSFSSKKMG 60 FEERTSLMIA SLYGSIEVLK YAIGSQKVDV NRACGSDGVT ALHCAVAGGS DSLIEVVKLL 120 IDASADVNAV DANGKKPGDL ISPHMKFLNN SKRRTLEMLL KGISVEAGDQ EEEKGIKRPL 180 VAKEGGNEKK EYPIDVSLPD INNGVYGTDE FRMYSFKVKT CSRAYSHDWT ECPFVHPGEN 240 ARRRDPRKHH YTCVPCPEFK KGTCAKGDSC EYAHGVFESW LHPAQYRTRL CKDETGCPRK 300 VCFFAHKPEE LRPLYASTGS ALPSPKSVSV NSMDLTTPSP LSLGSSSLIY PNTSTPPISP 360 SVTCSSPMGG SVRQHKANLT PPALQLPGSR LKTILSARDM DLLGLEKIQT QYQQRRQLAD 420 EMANLSSPYS KITDLKPTNL DNIYGSLDPS LLSQLQAPNG IQVHQNTSQF HASYPSNLSS 480 SPARKPSSFG YDSSAAVAAA VMNSRSSFAK RSQSFIDRSG GVGHRSCLSG AANSPSLMPS 540 KLSDWSSPDG KLDWGFNSED SNKFRKSSSF GIRSGNAALS TAMAPPNVDE PDVSWVHSLV 600 KDVPSNGAAQ YSLEQQHGRA RDITPHWADQ LCSNFA*

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MEAEIQENKR RAGFKSCSKL LALAAMDDLA SFISLVEEKG SNFDEVSIWY GRSFSSKKMG  60
FEERTSLMIA SLYGSIEVLK YAIGSQKVDV NRACGSDGVT ALHCAVAGGS DSLIEVVKLL  120
IDASADVNAV DANGKKPGDL ISPHMKFLNN SKRRTLEMLL KGISVEAGDQ EEEKGIKRPL  180
VAKEGGNEKK EYPIDVSLPD INNGVYGTDE FRMYSFKVKT CSRAYSHDWT ECPFVHPGEN  240
ARRRDPRKHH YTCVPCPEFK KGTCAKGDSC EYAHGVFESW LHPAQYRTRL CKDETGCPRK  300
VCFFAHKPEE LRPLYASTGS ALPSPKSVSV NSMDLTTPSP LSLGSSSLIY PNTSTPPISP  360
SVTCSSPMGG SVRQHKANLT PPALQLPGSR LKTILSARDM DLLGLEKIQT QYQQRRQLAD  420
EMANLSSPYS KITDLKPTNL DNIYGSLDPS LLSQLQAPNG IQVHQNTSQF HASYPSNLSS  480
SPARKPSSFG YDSSAAVAAA VMNSRSSFAK RSQSFIDRSG GVGHRSCLSG AANSPSLMPS  540
KLSDWSSPDG KLDWGFNSED SNKFRKSSSF GIRSGNAALS TAMAPPNVDE PDVSWVHSLV  600
KDVPSNGAAQ YSLEQQHGRA RDITPHWADQ LCSNFA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-173	C3H family protein