PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu063880.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 293aa MW: 30727.8 Da PI: 9.3619 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Oeu063880.3 36 KSKPCTKFFSTAGCPFGESCHFLH 59 7789******************** PP | |||||||
2 | zf-CCCH | 27.6 | 5e-09 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f Ck+Gd+C+FaHg+ Oeu063880.3 97 KTKICNKFNTAEGCKFGDKCHFAHGE 122 89**********************96 PP | |||||||
3 | zf-CCCH | 35.5 | 1.6e-11 | 259 | 284 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f+ G C +GdrC+FaHg+ Oeu063880.3 259 YKTKICENFSN-GSCTFGDRCHFAHGE 284 9**********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence |
MDTRKRSRGE ATFNAYGGFK KPKPEMDSLS SGIGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VHGGYNAVAQ MMNLVPIPTR TTGPPPISNG TASTAVKTKI CNKFNTAEGC KFGDKCHFAH 120 GEWELGKPIA ASQEDPRAVG PIPGRIGGRM DPPIPAGSFG ASATAKISVD ASLASAIIGR 180 GGVNSKQICR QTGAKLAIRD HETDPNLRNI ELEGTFEQIK EASAMVRDLI SSIGFAGGPA 240 KPTGGSAKPV GGPAPRSNYK TKICENFSNG SCTFGDRCHF AHGEAELRQH GA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 5e-89 | C3H family protein |