PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oeu063806.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 260aa MW: 29809.6 Da PI: 9.0321 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.3 | 6.3e-09 | 61 | 86 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +k elC f+r G C yGd+C++aH++ Oeu063806.2 61 FKSELCILFQR-GKCYYGDNCHYAHSM 86 699********.*************95 PP | |||||||
2 | zf-CCCH | 17.1 | 9.7e-06 | 117 | 131 | 11 | 25 |
GTS--TTTTT-SS-S CS zf-CCCH 11 rtGtCkyGdrCkFaH 25 + C+yGd+C+F H Oeu063806.2 117 SGKGCPYGDKCQFLH 131 5568*********** PP | |||||||
3 | zf-CCCH | 35.4 | 1.9e-11 | 170 | 195 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k++lC+ + ++G C+yG +C +aHg+ Oeu063806.2 170 KMKLCNKWEKFGSCPYGVNCVYAHGQ 195 899*********************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence |
MDSVHENETR SVHGVNDASN QQFFNQSNAE FGHFKKPRFS EAMRNPRVYL TINRSKLDIP 60 FKSELCILFQ RGKCYYGDNC HYAHSMSDIR NQSFNGPANG YQRNTMNKWK KCFKFSSGKG 120 CPYGDKCQFL HERVGEYRES SAISIVNGAD QIECKSLNAG QEYKRLNFRK MKLCNKWEKF 180 GSCPYGVNCV YAHGQAELQR SGCITELECA NASNAKAVAM QSSDSEQKTA RELRLQGKRC 240 FTKWNVEKIN RIYADWIES* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 7e-30 | C3H family protein |