PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu063150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LSD | ||||||||
Protein Properties | Length: 123aa MW: 12559.3 Da PI: 8.511 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 24.5 | 4.4e-08 | 4 | 17 | 12 | 25 |
zf-LSD1 12 rGApsVRCalCdtV 25 rGA+sVRC++C+tV Oeu063150.1 4 RGATSVRCSCCQTV 17 8************9 PP | |||||||
2 | zf-LSD1 | 48.2 | 1.8e-15 | 29 | 51 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg+Cr++L+YP+GApsV+Ca+C+ Oeu063150.1 29 CGNCRIMLMYPAGAPSVKCAICQ 51 **********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence |
MHARGATSVR CSCCQTVNLV PAPNHVVNCG NCRIMLMYPA GAPSVKCAIC QNITTVNVSN 60 QMGASRVPIP VQRPDGNSTS ASIPSTSPAA SHAQNQTVVV QNPSSVDESG KLVSNVVVGI 120 TT* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-36 | LSD family protein |