PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oeu062942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26982.3 Da PI: 10.1726 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.3 | 7.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien+s rqvtf+kRr g+lKKA+EL vLCdaev vi+fs tgklye++s Oeu062942.1 9 KKIENTSSRQVTFTKRRGGLLKKAKELAVLCDAEVGVIVFSGTGKLYEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 50.5 | 9.1e-18 | 84 | 172 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 a++ + + +++ Lk+e+e+L+ +R++lG++L+ Lsl+eLq +e++L ++ +++ K++ l+e++e+++ + +++ ++n+aLr+++ee Oeu062942.1 84 ANQVEVHADVNALKDELEKLKLMHRRMLGKELGGLSLQELQDMEHKLSEGAMLVKNEKEKKLFEKLEKSKLQRQKVVQQNEALREQVEE 172 456778999*****************************************************************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence |
MGRVKVEIKK IENTSSRQVT FTKRRGGLLK KAKELAVLCD AEVGVIVFSG TGKLYEFASF 60 GMEHIIERYK SLRPFEVAQL ENVANQVEVH ADVNALKDEL EKLKLMHRRM LGKELGGLSL 120 QELQDMEHKL SEGAMLVKNE KEKKLFEKLE KSKLQRQKVV QQNEALREQV EELKHQVGLS 180 RSHRLLGRKD YGTALTSVRE GSSDISLRLE LSLVDRPEKR KLPKTESSFK IPMDTN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13790.1 | 2e-41 | MIKC_MADS family protein |