PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu062901.3

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 533aa MW: 56449.8 Da PI: 8.6296

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu062901.3	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.9	2.9e-12	54	76	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+C+yG+rC+F+H++ Oeu062901.3 54 DCIHYLRTGFCRYGARCRFNHPR 76 7********************96 PP
2	zf-CCCH	29.4	1.3e-09	145	164	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +++rtG Ck+G++Ck++H++ Oeu062901.3 145 YYMRTGMCKFGASCKYHHPK 164 9*****************96 PP
3	zf-CCCH	33.8	5.7e-11	185	209	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++Ck++H+ Oeu062901.3 185 GEKECSYYVKTGQCKFGATCKYHHP 209 7899********************9 PP
4	zf-CCCH	37	5.5e-12	353	379	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++Ck++H+p Oeu062901.3 353 PGQPECQYYLKTGDCKFGSTCKYHHPP 379 5789*********************97 PP
5	zf-CCCH	36.5	7.9e-12	401	425	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ Oeu062901.3 401 APLCSHYAQNGVCKFGPSCKFDHPM 425 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MERYSGNQTM EGEPADPVAE WASPGGETGL GEPMWQLGLE VGPESYPERP DELDCIHYLR 60 TGFCRYGARC RFNHPRDRSA AMGNLKASGG EYPERVGQPI CRLKVRSAPS LLPPTREIEP 120 WKNAVVGFVL GVSPSFQNML KLGSYYMRTG MCKFGASCKY HHPKQGIGLS GPVALSISGY 180 PLRPGEKECS YYVKTGQCKF GATCKYHHPL PAGMQVPAPA TGPGPAAVPA PAPATYPAMQ 240 SFSIQTPQHY GVFSGNWPVA RPAMLPGSYV PGTYSPMLLP PGVVPVPGWT PYQIPASPVA 300 SPRSQPTAGA GIVYSLTQLS PSSAAYTGPY LSITSSAGPS GSSQKEQAFP ERPGQPECQY 360 YLKTGDCKFG STCKYHHPPE WSAPKINFGL SPMGLPLRPG APLCSHYAQN GVCKFGPSCK 420 FDHPMRTLSY SPSASSLTDM PVAPYPVGST HATLAPSSSS SDLRPDLISG FGRDTFSTQM 480 SSMNSSSASV GSVFSQSGHI PQSRGQQLGQ GSTFSSASSS SIGHGGEIRT SS*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MERYSGNQTM EGEPADPVAE WASPGGETGL GEPMWQLGLE VGPESYPERP DELDCIHYLR  60
TGFCRYGARC RFNHPRDRSA AMGNLKASGG EYPERVGQPI CRLKVRSAPS LLPPTREIEP  120
WKNAVVGFVL GVSPSFQNML KLGSYYMRTG MCKFGASCKY HHPKQGIGLS GPVALSISGY  180
PLRPGEKECS YYVKTGQCKF GATCKYHHPL PAGMQVPAPA TGPGPAAVPA PAPATYPAMQ  240
SFSIQTPQHY GVFSGNWPVA RPAMLPGSYV PGTYSPMLLP PGVVPVPGWT PYQIPASPVA  300
SPRSQPTAGA GIVYSLTQLS PSSAAYTGPY LSITSSAGPS GSSQKEQAFP ERPGQPECQY  360
YLKTGDCKFG STCKYHHPPE WSAPKINFGL SPMGLPLRPG APLCSHYAQN GVCKFGPSCK  420
FDHPMRTLSY SPSASSLTDM PVAPYPVGST HATLAPSSSS SDLRPDLISG FGRDTFSTQM  480
SSMNSSSASV GSVFSQSGHI PQSRGQQLGQ GSTFSSASSS SIGHGGEIRT SS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-125	C3H family protein