PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu062053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 389aa MW: 42962.6 Da PI: 8.7718 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.2e-11 | 31 | 56 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Oeu062053.1 31 GEPDCSYYIRTGLCRFGSTCRFNHPP 56 6899********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 77 | 101 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Oeu062053.1 77 QPECQYYLQTGTCKFGSTCKFHHPR 101 799********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.4e-12 | 124 | 147 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ Oeu062053.1 124 VECAYYLRTGQCKFGSTCKFHHPQ 147 79********************97 PP | |||||||
4 | zf-CCCH | 38.9 | 1.5e-12 | 266 | 292 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ Oeu062053.1 266 PGQPECQFYMKTGDCKFGAVCKFHHPR 292 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.3 | 2e-11 | 312 | 338 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++++G+Ck+G++CkF H++ Oeu062053.1 312 PGEAVCLFYSKYGICKFGPSCKFDHPM 338 57899********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence |
MTGQYHSDAL WQMNWRSREP TEPGPYPVRE GEPDCSYYIR TGLCRFGSTC RFNHPPNRKL 60 AIATARMKGE YPERIGQPEC QYYLQTGTCK FGSTCKFHHP RDKAGIAGKV ALNVLGYPLR 120 LNEVECAYYL RTGQCKFGST CKFHHPQPSN VMVSLRGSVY PPIHSPTTPG QLSFPFSRAS 180 FVPSPRWQSP SSYAPVIMPQ GVISVPGWNP YSAQLVSVSS SESQHPTAGN DPHQDEAASM 240 GSQFRSGSTP VDYYALQRDN EFPERPGQPE CQFYMKTGDC KFGAVCKFHH PRDRLIPIPD 300 CVLSPIGLPL RPGEAVCLFY SKYGICKFGP SCKFDHPMRV YTYNLAASSS GDAPEVRRFL 360 ASSSGTGVSS LPGKGLVEAS STNNRRLS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-171 | C3H family protein |